SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G08950 | AT | Annotation by Michelle Graham. TAIR10: Phosphate-responsive 1 family protein | chr4:5740378-5741322 FORWARD LENGTH=314 | SoyBase | E_val: 5.00E-158 | ISS |
| GO:0009741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF04674 | PFAM | Phosphate-induced protein 1 conserved region | JGI | ISS | |
| UniRef100_I1MAV8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAV8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O82161 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phi-1 protein n=1 Tax=Nicotiana tabacum RepID=O82161_TOBAC | SoyBase | E_val: 1.00E-171 | ISS |
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Glyma14g35330 not represented in the dataset |
Glyma14g35330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g176300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g35330.1 sequence type=CDS gene model=Glyma14g35330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAACTTTCATGTTGAAAATCTTCCTTCTAATTTCCATCTTTCAAATCTCTTTCGCCACTAGGAGGTTGAATGAGTTAGTTCAGGACCAAACTCAGCTTCTTCGTTACCACAATGGCCCTCTTCTCTCTGGCAAAATCTCCATTAACCTCATTTGGTACGGCCACTTCAAACCTTCCCAGAAGGCAATAGTCTCCGATTTCATCACCTCGCTGTCACCCTCATCCCCTCACAGCACCCAACCATCCGTCGCCACGTGGTGGAAAACCACAGAAAAATACTACCACCACCTCAGTAATACTAAAAAAACCTCCCCTCTTTCAATTCCACTCAATAAACAGATTCTCGACGAAAACTACTCGCTCGGCAAATCCCTCACGAGCAAGCACCTCATTCAGCTAGCTTCAAAGGGTGACCACAAAAACGCCATCAACGTTGTGTTAACTTCCGCTGACGTGGCAGTTGAAGGTTTCTGCACGAGCCGATGTGGGACCCACGGTTCTTCCTCAGCGGGCCATGCAAAGAACAAGAACTACAAGTTCGCATACATATGGGTTGGGAATTCAGAGGCCCAATGCCCGGGCCAATGCGCGTGGCCGTTTCACCAGCCCATATATGGGCCTCAAAGCCCACCTCTTGTTGCGCCGAACAACGACGTGGGCATTGACGGAATGGTAATAAACCTGGCGAGCCTCTTGGCTGGGACCGTTACGAACCCGTTTGGCAACGGGTTCTATCAGGGCCCAGCCGAGGCTCCACTCGAAGCGGCTACGGCTTGCCCTGGGGTTTATGGCAAAGGGGCTTACCCTGGCTACGCTGGGAATTTGAACGTGGACTCTTCCACTGGTGCTAGCTATAATGCGCACGGTGCTAATGGAAGGAAGTACTTGCTTCCTGCTTTGTATGACCCTGCCACGTCATCGTGCTCCACCCTAGTGTGA
>Glyma14g35330.1 sequence type=predicted peptide gene model=Glyma14g35330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTFMLKIFLLISIFQISFATRRLNELVQDQTQLLRYHNGPLLSGKISINLIWYGHFKPSQKAIVSDFITSLSPSSPHSTQPSVATWWKTTEKYYHHLSNTKKTSPLSIPLNKQILDENYSLGKSLTSKHLIQLASKGDHKNAINVVLTSADVAVEGFCTSRCGTHGSSSAGHAKNKNYKFAYIWVGNSEAQCPGQCAWPFHQPIYGPQSPPLVAPNNDVGIDGMVINLASLLAGTVTNPFGNGFYQGPAEAPLEAATACPGVYGKGAYPGYAGNLNVDSSTGASYNAHGANGRKYLLPALYDPATSSCSTLV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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