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Report for Sequence Feature Glyma14g35280

Feature Type:gene_model
Chromosome:Gm14
Start:44186639
stop:44187840
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g35280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G22100AT Annotation by Michelle Graham. TAIR10: RNA cyclase family protein | chr5:7329015-7330718 FORWARD LENGTH=375 SoyBaseE_val: 5.00E-74ISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0042254GO-bp Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0003963GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA-3'-phosphate cyclase activity SoyBaseN/AISS
PTHR11096Panther RNA 3' TERMINAL PHOSPHATE CYCLASE JGI ISS
PF01137PFAM RNA 3'-terminal phosphate cyclase JGI ISS
PF05189PFAM RNA 3'-terminal phosphate cyclase (RTC), insert domain JGI ISS
UniRef100_B9T7D2UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA 3' terminal phosphate cyclase, putative n=1 Tax=Ricinus communis RepID=B9T7D2_RICCO SoyBaseE_val: 3.00E-95ISS
UniRef100_I1MAV7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MAV7_SOYBN SoyBaseE_val: 5.00E-160ISS

Expression Patterns of Glyma14g35280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g35280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g175900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g35280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g35280
>Glyma14g35280.2   sequence type=CDS   gene model=Glyma14g35280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGCAGACAACACAGTGCACACGATTGTGGCGTCTCATGGTCCATTGGTTATTTTTTGGAGCCACGCATTATGTTGTGTTTGTTTGCCAAACAGCCCCTTACTATCAGGCTCAAAGGAATTACAAATGATTCTAAAGATCCATCTGTTGATACCTTCAAGTCAACAACTTTACCTATATTAAAGCGCTTTGGAGTTCCATCTGAAGGCTTGGAGATTAAAGTAGAGAGTCATGGATTACCTCCCAATGGTGGTAGTGAAGTTCTTTTGTCTGTTCCTGTTGTTCAGAGTCTAACGGTAATTAGTTGGATTGATGAGGGTTTTGTGAGGAAAATTAGGGGAACTTCTTTTTCAACAAGAATGTCTGTTCAGTTTGAATATGGCATGATTAAAGTTGCCCGTGGAATCATAAATCCGCTAGTTTCTGATGTGCACATTTTCTCTGATCACAGATCAGGTCCTGAGGCTGGAAAATATGGGATTTCACTGGTTGTGGAAACTACGTCTGGTTGTTTCATTTTTATAGACACTGTTGTTTCTCAAGTAAGGGATAACGATACTTGTGGCCTTGCAGATGATGCGAGAAGAGACTTGATGCCTCCAAATGATAATGGTGTGGGGATTGCTAGTGCATTACTAGGGGAGATAGCTCAAAGTGGA
Predicted protein sequences of Glyma14g35280
>Glyma14g35280.2   sequence type=predicted peptide   gene model=Glyma14g35280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGRQHSAHDCGVSWSIGYFLEPRIMLCLFAKQPLTIRLKGITNDSKDPSVDTFKSTTLPILKRFGVPSEGLEIKVESHGLPPNGGSEVLLSVPVVQSLTVISWIDEGFVRKIRGTSFSTRMSVQFEYGMIKVARGIINPLVSDVHIFSDHRSGPEAGKYGISLVVETTSGCFIFIDTVVSQVRDNDTCGLADDARRDLMPPNDNGVGIASALLGEIAQSG






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