Glyma14g35060 - SoyBase

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Report for Sequence Feature Glyma14g35060

Feature Type:	gene_model
Chromosome:	Gm14
Start:	43779244
stop:	43783096
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g35060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78230	AT	Annotation by Michelle Graham. TAIR10: Outer arm dynein light chain 1 protein \| chr1:29430226-29432516 FORWARD LENGTH=681	SoyBase	E_val: 2.00E-149	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
PTHR10588	Panther	PROTEIN PHOSPHATASES PP1 REGULATORY SUBUNIT	JGI		ISS
PTHR10588:SF49	Panther	LEUCINE RICH REPEAT FAMILY PROTEIN	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_G7KBA0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KBA0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BDE2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BDE2 related cluster n=1 Tax=unknown RepID=UPI000233BDE2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g35060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g35060

Paralog	Evidence	Comments
Glyma13g01760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g35060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g174400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g35060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g35060

Limit To All Plant Sequences

>Glyma14g35060.3   sequence type=transcript   gene model=Glyma14g35060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTACGTGACTTCACTGGTTGAAACTAGAAAGAAAGAAAGATAGAAACACACCGTGTAGTTGTGTTGGTGCCGCTTATTATATCTTCTCTCTTTCTCTTTCTCTTTCACTTTCTTAACAACAACTATCAACTACGTACCTCTTTCTTTCTCTAGTGTTTTCTGTTCCTTTGGTTTGCATCTCATACACGACATCACGTGCGAACACCACACAACCTTAACTTCCTCGATTTCACTTCTTTCTTTCTCACACACCATACCAACACTCTTTATAATAGCCATTTGGCATCCCAAAGCTTTTGAAGATTCCAGCACAAAGGCACAGATACTGTCTGAAAGAGTTTTTATTAGCGTCGCGGTTCTGCTTTTCAAGGTTTATTTGGAGAGGAAAATACTGGTGGAGATTTGAAGAGGAGCATATACAACTCTGGCCAACTCTTTAAAGATATCTTCTCAAACCGGAAGAGGCTTAGGTCTTTTTATTTCCGGTTGTCAGATTTGTCCAGAAAGGGTCTTATCTCTTGTTCTGCGCCTTCCCATAGATTATGGCTAACATTTGATTCAATGTGATAGCTACTCAACTACTAGTATGTTTGTATTGTCATCCTCCTACTTTTTTTCAATGCAATTTGTTGTGAAAGGAAAAAAATTGTTGGATCTATGTTCAAAGCTGTTTAGGATTGCTTAGAAAGTGAAACGGATTGAAAAGCGGCAAAGGGGATTGAATTGAAAGGTTTTGGAACAAGCTTTATCTTCTGGGATGGCCATGGTTAGGTGCTTCTCTCTTTTGCCTGTGAGGAAGGACAAACACAAGGGGAATGAAAGGTCTTCAAAAGAGGACTTTAACACTCTACTTGCCAAACTACAATCTACAAAAAAAATAACATCAGAGTCAACCACTTTTGATGCCATTGGTATTCAGAAAAATTCAAGGTTCAATGCGACGAGGATTATGACCCTTGAGAGTCCTGTGAAGGATGAAGCACATGAAACTTATAAAGATGAAGATTCACCATTGATCAAGAGAGAACTCTCTGATTTTGATCTCCAAGATCATGAAGCTGTTGCAAGCAACGCATATGATACAACAGATAAAAAGGTAGAGTACCCCATTTTATATGAAAACCAAGTCAACAATGAATTGGAAGACAAAAATGATAGATACAGCCAAAAGAGTGTCGATACAACTGAAAGCGGACACATCACTGATCCTGGAATTGGCAAGGCTGATTCCTGGGCTTCTCCAAAGTTCAAGAGACACTTCTCCAACCTTGAAAAATTTGATGAGCATGGGAAGATAACTCGTCACTTGCCGGCTTCAAAGTCGAAGTCTTTTGAGAATTTTCAGGAGTTATCAGCAATGGTTAATCTTGAAAGCCCTAGGTCTGTGATGAGTCACTACAGTGCTGATAGAGTATTGTTGAAAAGGCACTCTTCAAGTCAGGTACTCCCTTCTAGAAGTAAAAAACTGTGGTGGAAGATGATCCTATGGAGCCACAGGAACACACGCAGAACTCTCCCTAGCAATTCAACACTAGTTCCTACTAGTGCTGCTTTAAATAGTGGATACTCTTCAGACACCCTTGAACTGAAACAAGGCAAGGCATTGAGGCCTGTGAAATCTTCTGATTCAATTACTATGGAATCCTTTAACAAAAGAAGAATTGGTAAAAATATTGATAATCAAAGGGGGAGCAGGTTTCAAAGCGACCAATGGATTGCTTTCTCAACAGAATCATCTTCTTTTTCCAGAGTGGATGCATGGGTGAAGGGTCTCGAAATTCAGCAAATGCTTCCTGAGGATGATTTTGATGATGACAATGCCAGAAGAAGCATTGTCTTCCCACCTTCTCCTAATGCTGGTGGGTCAATGATGAGAACCACATCTCAGTTGACTTATCCAGATGCCAATCTTTCAAAAGAGGCTTTAACTGCGATTAGTGTAGTCCAGTCTCTAAATCCAGCTTCAACTATTGCTCACATATCTGGTATTGGTGTAAAAGCCATCCCTGCTATTTCACACTTATCCAATCTCCGCTCTGTCAACTTGTCAAATAATTTCATAGTTCACATCTCACCAGGAGTTCTACCAAAGGGTATTCAAACACTTAACTTATCAAAAAACAAGATCAGTGCCCTTGAGGGCCTCAGAGAATTGACCAAGTTGCGGGTACTTGACCTAAGCTACAACCGTATCTCGAGAATTGGACAAGGTTTGTCAAGTTGCACACTTATCAAAGAGCTATATCTTGTGGGGAACAAATTAAGTGATGTTGAAGGGCTACACAGGCTATTGAAGCTAACAGTTCTAGAGTTGAGCTTCAACAAGATCACAACAACAAAAGCATTAGGCCAGCTAGTGGCTAACTACAACTCACTTAAGGCCCTTAATCTCCTTGGAAATCCGATTCAAAGCAATATCAATGATGACCAGCTTAGCAAAGCAGTCTGTGGTCTCCTTCCAAAGGTGGTGTACCTGAACAAGCAACCCCTTAAGGCCAATAGGACACGCGAAATATTAAGCGATAGTGTTGCCAGAGCTGCACTCGGGAACAGCACACGGAGCTGTGAAAGAAGATCAGTAAGAAGAGTTGGCCATGGAGGATCAAATCTTTCCAGAGGGAATAGTAGAAATGCCAGTGTTTCCCAGAAAAGCATGAACCGGACAAGGAGGTGAAATTGAACTTGTTAGTTGCATGTAAAAGGAACAACTCAATGGAACACTTTTCATTTGGTTCTTCTCAATGTTATAGCAGAGGAAACTGTGTTCTAGATGTTGCTGTCTCTTGATTTGTTTGTGAGAGATGTAAAATTTCATTTAAATAGCTTAAACGTTTAAGATAATTGTTTCCTGATATATTACCGAAGCCCTCATAATTATGTAGTCTCTTCAAGGCCAAGGGACTCTATCATGAATGGGTGTGTTAGAATTTAAAATGAAAGTCATTATTTGCTTTCATCCTACAGTTTGAACTTTTGGAACGTTTGATTCATGACATTGTTAATTGATAAAAGTGTTGAAGTAATGGGGTCTTCTTTCTCTCCAACTTGATAAATGATCATCTGGGTT

Coding sequences of Glyma14g35060

Limit To All Plant Sequences

>Glyma14g35060.2   sequence type=CDS   gene model=Glyma14g35060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATGGTTAGGTGCTTCTCTCTTTTGCCTGTGAGGAAGGACAAACACAAGGGGAATGAAAGGTCTTCAAAAGAGGACTTTAACACTCTACTTGCCAAACTACAATCTACAAAAAAAATAACATCAGAGTCAACCACTTTTGATGCCATTGGTATTCAGAAAAATTCAAGGTTCAATGCGACGAGGATTATGACCCTTGAGAGTCCTGTGAAGGATGAAGCACATGAAACTTATAAAGATGAAGATTCACCATTGATCAAGAGAGAACTCTCTGATTTTGATCTCCAAGATCATGAAGCTGTTGCAAGCAACGCATATGATACAACAGATAAAAAGGTAGAGTACCCCATTTTATATGAAAACCAAGTCAACAATGAATTGGAAGACAAAAATGATAGATACAGCCAAAAGAGTGTCGATACAACTGAAAGCGGACACATCACTGATCCTGGAATTGGCAAGGCTGATTCCTGGGCTTCTCCAAAGTTCAAGAGACACTTCTCCAACCTTGAAAAATTTGATGAGCATGGGAAGATAACTCGTCACTTGCCGGCTTCAAAGTCGAAGTCTTTTGAGAATTTTCAGGAGTTATCAGCAATGGTTAATCTTGAAAGCCCTAGGTCTGTGATGAGTCACTACAGTGCTGATAGAGTATTGTTGAAAAGGCACTCTTCAAGTCAGGTACTCCCTTCTAGAAGTAAAAAACTGTGGTGGAAGATGATCCTATGGAGCCACAGGAACACACGCAGAACTCTCCCTAGCAATTCAACACTAGTTCCTACTAGTGCTGCTTTAAATAGTGGATACTCTTCAGACACCCTTGAACTGAAACAAGGCAAGGCATTGAGGCCTGTGAAATCTTCTGATTCAATTACTATGGAATCCTTTAACAAAAGAAGAATTGGTAAAAATATTGATAATCAAAGGGGGAGCAGGTTTCAAAGCGACCAATGGATTGCTTTCTCAACAGAATCATCTTCTTTTTCCAGAGTGGATGCATGGGTGAAGGGTCTCGAAATTCAGCAAATGCTTCCTGAGGATGATTTTGATGATGACAATGCCAGAAGAAGCATTGTCTTCCCACCTTCTCCTAATGCTGGTGGGTCAATGATGAGAACCACATCTCAGTTGACTTATCCAGATGCCAATCTTTCAAAAGAGGCTTTAACTGCGATTAGTGTAGTCCAGTCTCTAAATCCAGCTTCAACTATTGCTCACATATCTGGTATTGGTGTAAAAGCCATCCCTGCTATTTCACACTTATCCAATCTCCGCTCTGTCAACTTGTCAAATAATTTCATAGTTCACATCTCACCAGGAGTTCTACCAAAGGGTATTCAAACACTTAACTTATCAAAAAACAAGATCAGTGCCCTTGAGGGCCTCAGAGAATTGACCAAGTTGCGGGTACTTGACCTAAGCTACAACCGTATCTCGAGAATTGGACAAGGTTTGTCAAGTTGCACACTTATCAAAGAGCTATATCTTGTGGGGAACAAATTAAGTGATGTTGAAGGGCTACACAGGCTATTGAAGCTAACAGTTCTAGAGTTGAGCTTCAACAAGATCACAACAACAAAAGCATTAGGCCAGCTAGTGGCTAACTACAACTCACTTAAGGCCCTTAATCTCCTTGGAAATCCGATTCAAAGCAATATCAATGATGACCAGCTTAGCAAAGCAGTCTGTGGTCTCCTTCCAAAGGTGGTGTACCTGAACAAGCAACCCCTTAAGGCCAATAGGACACGCGAAATATTAAGCGATAGTGTTGCCAGAGCTGCACTCGGGAACAGCACACGGAGCTGTGAAAGAAGATCAGTAAGAAGAGTTGGCCATGGAGGATCAAATCTTTCCAGAGGGAATAGTAGAAATGCCAGTGTTTCCCAGAAAAGCATGAACCGGACAAGGAGGTGA

>Glyma14g35060.3   sequence type=CDS   gene model=Glyma14g35060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATGGTTAGGTGCTTCTCTCTTTTGCCTGTGAGGAAGGACAAACACAAGGGGAATGAAAGGTCTTCAAAAGAGGACTTTAACACTCTACTTGCCAAACTACAATCTACAAAAAAAATAACATCAGAGTCAACCACTTTTGATGCCATTGGTATTCAGAAAAATTCAAGGTTCAATGCGACGAGGATTATGACCCTTGAGAGTCCTGTGAAGGATGAAGCACATGAAACTTATAAAGATGAAGATTCACCATTGATCAAGAGAGAACTCTCTGATTTTGATCTCCAAGATCATGAAGCTGTTGCAAGCAACGCATATGATACAACAGATAAAAAGGTAGAGTACCCCATTTTATATGAAAACCAAGTCAACAATGAATTGGAAGACAAAAATGATAGATACAGCCAAAAGAGTGTCGATACAACTGAAAGCGGACACATCACTGATCCTGGAATTGGCAAGGCTGATTCCTGGGCTTCTCCAAAGTTCAAGAGACACTTCTCCAACCTTGAAAAATTTGATGAGCATGGGAAGATAACTCGTCACTTGCCGGCTTCAAAGTCGAAGTCTTTTGAGAATTTTCAGGAGTTATCAGCAATGGTTAATCTTGAAAGCCCTAGGTCTGTGATGAGTCACTACAGTGCTGATAGAGTATTGTTGAAAAGGCACTCTTCAAGTCAGGTACTCCCTTCTAGAAGTAAAAAACTGTGGTGGAAGATGATCCTATGGAGCCACAGGAACACACGCAGAACTCTCCCTAGCAATTCAACACTAGTTCCTACTAGTGCTGCTTTAAATAGTGGATACTCTTCAGACACCCTTGAACTGAAACAAGGCAAGGCATTGAGGCCTGTGAAATCTTCTGATTCAATTACTATGGAATCCTTTAACAAAAGAAGAATTGGTAAAAATATTGATAATCAAAGGGGGAGCAGGTTTCAAAGCGACCAATGGATTGCTTTCTCAACAGAATCATCTTCTTTTTCCAGAGTGGATGCATGGGTGAAGGGTCTCGAAATTCAGCAAATGCTTCCTGAGGATGATTTTGATGATGACAATGCCAGAAGAAGCATTGTCTTCCCACCTTCTCCTAATGCTGGTGGGTCAATGATGAGAACCACATCTCAGTTGACTTATCCAGATGCCAATCTTTCAAAAGAGGCTTTAACTGCGATTAGTGTAGTCCAGTCTCTAAATCCAGCTTCAACTATTGCTCACATATCTGGTATTGGTGTAAAAGCCATCCCTGCTATTTCACACTTATCCAATCTCCGCTCTGTCAACTTGTCAAATAATTTCATAGTTCACATCTCACCAGGAGTTCTACCAAAGGGTATTCAAACACTTAACTTATCAAAAAACAAGATCAGTGCCCTTGAGGGCCTCAGAGAATTGACCAAGTTGCGGGTACTTGACCTAAGCTACAACCGTATCTCGAGAATTGGACAAGGTTTGTCAAGTTGCACACTTATCAAAGAGCTATATCTTGTGGGGAACAAATTAAGTGATGTTGAAGGGCTACACAGGCTATTGAAGCTAACAGTTCTAGAGTTGAGCTTCAACAAGATCACAACAACAAAAGCATTAGGCCAGCTAGTGGCTAACTACAACTCACTTAAGGCCCTTAATCTCCTTGGAAATCCGATTCAAAGCAATATCAATGATGACCAGCTTAGCAAAGCAGTCTGTGGTCTCCTTCCAAAGGTGGTGTACCTGAACAAGCAACCCCTTAAGGCCAATAGGACACGCGAAATATTAAGCGATAGTGTTGCCAGAGCTGCACTCGGGAACAGCACACGGAGCTGTGAAAGAAGATCAGTAAGAAGAGTTGGCCATGGAGGATCAAATCTTTCCAGAGGGAATAGTAGAAATGCCAGTGTTTCCCAGAAAAGCATGAACCGGACAAGGAGGTGA

Predicted protein sequences of Glyma14g35060

Limit To All Plant Sequences

>Glyma14g35060.2   sequence type=predicted peptide   gene model=Glyma14g35060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMVRCFSLLPVRKDKHKGNERSSKEDFNTLLAKLQSTKKITSESTTFDAIGIQKNSRFNATRIMTLESPVKDEAHETYKDEDSPLIKRELSDFDLQDHEAVASNAYDTTDKKVEYPILYENQVNNELEDKNDRYSQKSVDTTESGHITDPGIGKADSWASPKFKRHFSNLEKFDEHGKITRHLPASKSKSFENFQELSAMVNLESPRSVMSHYSADRVLLKRHSSSQVLPSRSKKLWWKMILWSHRNTRRTLPSNSTLVPTSAALNSGYSSDTLELKQGKALRPVKSSDSITMESFNKRRIGKNIDNQRGSRFQSDQWIAFSTESSSFSRVDAWVKGLEIQQMLPEDDFDDDNARRSIVFPPSPNAGGSMMRTTSQLTYPDANLSKEALTAISVVQSLNPASTIAHISGIGVKAIPAISHLSNLRSVNLSNNFIVHISPGVLPKGIQTLNLSKNKISALEGLRELTKLRVLDLSYNRISRIGQGLSSCTLIKELYLVGNKLSDVEGLHRLLKLTVLELSFNKITTTKALGQLVANYNSLKALNLLGNPIQSNINDDQLSKAVCGLLPKVVYLNKQPLKANRTREILSDSVARAALGNSTRSCERRSVRRVGHGGSNLSRGNSRNASVSQKSMNRTRR*

>Glyma14g35060.3   sequence type=predicted peptide   gene model=Glyma14g35060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMVRCFSLLPVRKDKHKGNERSSKEDFNTLLAKLQSTKKITSESTTFDAIGIQKNSRFNATRIMTLESPVKDEAHETYKDEDSPLIKRELSDFDLQDHEAVASNAYDTTDKKVEYPILYENQVNNELEDKNDRYSQKSVDTTESGHITDPGIGKADSWASPKFKRHFSNLEKFDEHGKITRHLPASKSKSFENFQELSAMVNLESPRSVMSHYSADRVLLKRHSSSQVLPSRSKKLWWKMILWSHRNTRRTLPSNSTLVPTSAALNSGYSSDTLELKQGKALRPVKSSDSITMESFNKRRIGKNIDNQRGSRFQSDQWIAFSTESSSFSRVDAWVKGLEIQQMLPEDDFDDDNARRSIVFPPSPNAGGSMMRTTSQLTYPDANLSKEALTAISVVQSLNPASTIAHISGIGVKAIPAISHLSNLRSVNLSNNFIVHISPGVLPKGIQTLNLSKNKISALEGLRELTKLRVLDLSYNRISRIGQGLSSCTLIKELYLVGNKLSDVEGLHRLLKLTVLELSFNKITTTKALGQLVANYNSLKALNLLGNPIQSNINDDQLSKAVCGLLPKVVYLNKQPLKANRTREILSDSVARAALGNSTRSCERRSVRRVGHGGSNLSRGNSRNASVSQKSMNRTRR*

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