Glyma14g35030 - SoyBase

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Report for Sequence Feature Glyma14g35030

Feature Type:	gene_model
Chromosome:	Gm14
Start:	43721806
stop:	43723827
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g35030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18910	AT	Annotation by Michelle Graham. TAIR10: NOD26-like intrinsic protein 1;2 \| chr4:10366211-10368179 FORWARD LENGTH=294	SoyBase	E_val: 3.00E-66	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0015700	GO-bp	Annotation by Michelle Graham. GO Biological Process: arsenite transport	SoyBase	N/A	ISS
GO:0046685	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0080170	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide transmembrane transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015105	GO-mf	Annotation by Michelle Graham. GO Molecular Function: arsenite transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015250	GO-mf	Annotation by Michelle Graham. GO Molecular Function: water channel activity	SoyBase	N/A	ISS
KOG0223	KOG	Aquaporin (major intrinsic protein family)	JGI		ISS
PTHR19139	Panther	AQUAPORIN TRANSPORTER	JGI		ISS
PTHR19139:SF22	Panther	gb def: glycerol uptake facilitator protein [mycoplasma pulmonis]	JGI		ISS
PF00230	PFAM	Major intrinsic protein	JGI		ISS
UniRef100_A2Q6E3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aquaporin NIP1-1 n=1 Tax=Medicago truncatula RepID=A2Q6E3_MEDTR	SoyBase	E_val: 1.00E-133	ISS
UniRef100_I1MAU3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MAU3_SOYBN	SoyBase	E_val: 5.00E-154	ISS

Expression Patterns of Glyma14g35030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g35030 not represented in the dataset	Glyma14g35030 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g35030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g174300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g35030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g35030

Limit To All Plant Sequences

>Glyma14g35030.2   sequence type=CDS   gene model=Glyma14g35030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATTCACTATCGGTTAATTTTGATTCTTCAATCAAGTCTGAATTCTCCACCGAACAAGCACACAAAACTACCCATGAGGCTAAACACTCTCCATCTAACATCCAAAAGGCTATTGCTGAGGTTGTTGGTACATACATTCTTATATTTGCAGGATGTGGAGCTGCTCTTGTAAATGAGAAGTTGCCCCTTACAATAGTAGGCATAGCAATGGTTTCGGGTCTAGGTCTAACGGTGGCTACATATTCTGTTGGCCATGTCTCTGGTGGCCATTTCAATCCTGCAGTCACAATTGCTTTGGCTGCTGTCAGAAAAGTTCAATTTAAACTTGTGCCTATTTATGTGTTGTGCCAGATGATGGGTGCTACACTGGCCCCTCTCACCCTCAAAGTGTTGTATCATGACAAGGCAGATATTGGAGTAACAGTGACTAAATACTTGAGCTCAACTTCTGATCTAGAAGCAATAGTGTGGGAATTCATCACCACATCCATACTAATGCTCACCATTCGCGGTGTTGCCACTGATCACAGAGGGAGCAAAGATCTCACTGGAGTTGCAATAGGCATTTCAGTTCTGATTAACGTCATCATTGCCGGGCCTATTACTGGAGCTTCAATGAATCCAGCAAGGAGTTTAGGTCCAGCTATTGTATCTGGTGATTACAAAAACATTTGGGTTTATATCATAAGCCCAATTCTTGGTGCAGTCTCAGCAAGTACACTTTACAAATTCCTAGAAGTAAACAAACCAGTTAAACCCGAACCATGCCATTGTAACATATGCAATCATAATCATTTACCTTTCTAA

Predicted protein sequences of Glyma14g35030

Limit To All Plant Sequences

>Glyma14g35030.2   sequence type=predicted peptide   gene model=Glyma14g35030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSLSVNFDSSIKSEFSTEQAHKTTHEAKHSPSNIQKAIAEVVGTYILIFAGCGAALVNEKLPLTIVGIAMVSGLGLTVATYSVGHVSGGHFNPAVTIALAAVRKVQFKLVPIYVLCQMMGATLAPLTLKVLYHDKADIGVTVTKYLSSTSDLEAIVWEFITTSILMLTIRGVATDHRGSKDLTGVAIGISVLINVIIAGPITGASMNPARSLGPAIVSGDYKNIWVYIISPILGAVSASTLYKFLEVNKPVKPEPCHCNICNHNHLPF*

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