|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G55020 | AT | Annotation by Michelle Graham. TAIR10: lipoxygenase 1 | chr1:20525798-20530143 FORWARD LENGTH=859 | SoyBase | E_val: 6.00E-43 | ISS |
GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
GO:0009816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction | SoyBase | N/A | ISS |
GO:0010311 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root formation | SoyBase | N/A | ISS |
GO:0030397 | GO-bp | Annotation by Michelle Graham. GO Biological Process: membrane disassembly | SoyBase | N/A | ISS |
GO:0034440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid oxidation | SoyBase | N/A | ISS |
GO:0040007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: growth | SoyBase | N/A | ISS |
GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
GO:0016165 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lipoxygenase activity | SoyBase | N/A | ISS |
PTHR11771 | Panther | LIPOXYGENASE | JGI | ISS | |
PTHR11771:SF2 | Panther | LIPOXYGENASE | JGI | ISS | |
PF00305 | PFAM | Lipoxygenase | JGI | ISS | |
UniRef100_Q43446 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lipoxygenase n=2 Tax=Glycine max RepID=Q43446_SOYBN | SoyBase | E_val: 3.00E-79 | ISS |
UniRef100_UPI000233EBEF | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EBEF related cluster n=1 Tax=unknown RepID=UPI000233EBEF | SoyBase | E_val: 3.00E-84 | ISS |
Glyma14g34920 not represented in the dataset |
Glyma14g34920 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g34920.1 sequence type=CDS gene model=Glyma14g34920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GACTATCCTTATGCTTCTGATGGGCTAGAGATATGGGATGCTATCAAGTCTAGGGTGGAAGAATATAGATGCAAACTCGTGAAGAGTTGGTTGAAGCTTCCGCTACCCTCATATGGATTGCTTCAGCTCTTCATGCTGCTGTTAACTTTGGGCAGCCAACTATTAGCAGGAGATTCATGCCTGAGAAAAGGGTCTCCTGAATATGATGCGTTGGCTAAGAACCCTGAGAAGGAGTTTTTGAAGACTATTACAAGCAAGAAAGAGACCCTCATTGACCTTACAGTTATAGAAATTTTATCAAGGCACACATCTGATGAGTTCTACCTTGGGCAGAGAGATGGTGGTGACTACTGGACTTCTGATGCCGGGCCATTAGAGGCCTTTAAGAGGTTTGGAAACAATCTTGAAGAGATTGAAAAGAAGCTTATAGAGAAGAACAATGATGAGACATTGAGAAACCGCTATGGGCCGGCTAAAATGCCTTACACTTTGCTTTATCCTTCTAGTGAGGAGGGATTGACTTTCAGAGGAATTCCCAAAAGTATCTCTATCTAA
>Glyma14g34920.1 sequence type=predicted peptide gene model=Glyma14g34920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high DYPYASDGLEIWDAIKSRVEEYRCKLVKSWLKLPLPSYGLLQLFMLLLTLGSQLLAGDSCLRKGSPEYDALAKNPEKEFLKTITSKKETLIDLTVIEILSRHTSDEFYLGQRDGGDYWTSDAGPLEAFKRFGNNLEEIEKKLIEKNNDETLRNRYGPAKMPYTLLYPSSEEGLTFRGIPKSISI*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||