SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G78130 | AT | Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr1:29400171-29401814 FORWARD LENGTH=490 | SoyBase | E_val: 0 | ISS |
| GO:0009567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005351 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity | SoyBase | N/A | ISS |
| GO:0015144 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1330 | KOG | Sugar transporter/spinster transmembrane protein | JGI | ISS | |
| PTHR24003 | Panther | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PR | JGI | ISS | |
| PTHR24003:SF22 | Panther | JGI | ISS | ||
| PF07690 | PFAM | Major Facilitator Superfamily | JGI | ISS | |
| UniRef100_G7KAD2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Quinolone resistance protein norA n=1 Tax=Medicago truncatula RepID=G7KAD2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MAS9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAS9_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma14g34710 not represented in the dataset |
Glyma14g34710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g172300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g34710.1 sequence type=CDS gene model=Glyma14g34710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGCGGAGACGGTGACGCTGTTGCTGGTGAACCTGGCGGGGATAATGGAGAGGGCCGACGAGTCGCTGCTTCCGGGAGTGTACAAGGAAGTTGGCACGGCGCTCCACACCGACCCCACCGGTTTGGGTTACCTCACTCTCTTCCGATCCATCGTACAGTCCTCCTGCTACCCCGTCGCCGCCTACCTCGCCGTGCGCCACAACCGCGCCCACGTCATCGCCGTCGGGGCCTTCCTCTGGGCCGCCGCCACCTTCCTCGTCGCGTTCTCCTCCACTTTCTTCCAGGTAGCTTTATCGCGAGCATTTAATGGGATTGGCCTTGCACTTGTAACACCTGCAATTCAGTCCCTTGTTGCCGACTCAACTGATGATAGCAATCGTGGCATGGCTTTTGGATGGCTTCAACTAACAGGAAATGTTGGATCAATTATTGGAGGCCTCTTCTCAGTGTTGATAGCTCCAATAACAGTCTTTGGTATCCCTGGTTGGAGAATTTCCTTTCATATTGTGGGATTAATAAGCATTATAGTAGGTGCTTTAGTATACCTCTTTGCCAATGATCCACACTTCTCAGATAATGGTACAAACAGTAGAAGGCAAGCTCCAAATAAAACATTTTGGTCTGAAGTGAAAGATCTGGTTCAGGAATCCAAGTCAGTTTTGAAGATTTCATCTTTTCAGATTATTGTTGCCCAGGGTGTCACTGGCTCCTTTCCCTGGTCTGCTTTATCATTTGCACCAATGTGGTTAGAGCTGACTGGCTTCTCCCATGAGAAAACTGCTTTCCTCATGGGTTTGTTTGTGGTTGCCAGTTCTATTGGGGGATTGTTTGGAGGAAAGATGGGAGATATCCTATCCAAGCGCTATCCAAATTCTGGGAGGATAATTCTGGCACAGATAAGCTCTGGATCAGCAATCCCCCTAGCAGCACTTCTTTTGATTGGTTTGCCAGATGATCCATCCACGATAATATCTCATGGTTTGGTTCTAATCATTATGGGGCTCTTGATATCTTGGAATGGTCCAGCTACGAATAATCCAATTTTTGCAGAGATAGTTCCAGAGAGATCCCGCACAAGTGTATATGCCATGGACCGATCTTTTGAATCTATACTATCATCTTTTGCTCCCCCTGCAGTGGGGATTTTGGCCCAGCATGTTTATGGGTATAAGCCCATTCCTGAAGGGTCTAGTGAATCTCAAGAGATTTTAACAGACAGAGAGAATGCTGCATCATTGGCGAAGTCTCTTTACACTGCAATAGGAATTCCAATGGCTCTATGCTGTATAATCTACACATTTCTTTATAGGACCTATCCGAGAGACAGGGAACGTGCTAAGATGGAGGCTTTAATAGAATCAGAGATGCAGCTAATCGAATCAGGTGGTTTAGCTATGGATAGAGAGTTTGAGTCAGAGGAATTGTCTATTGTGGATTATGATGATGGTGATATTGATGATGATGAGAACACATTACTCTACAGGCAGTTGACACTTTCCAAAGAATAG
>Glyma14g34710.1 sequence type=predicted peptide gene model=Glyma14g34710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKAETVTLLLVNLAGIMERADESLLPGVYKEVGTALHTDPTGLGYLTLFRSIVQSSCYPVAAYLAVRHNRAHVIAVGAFLWAAATFLVAFSSTFFQVALSRAFNGIGLALVTPAIQSLVADSTDDSNRGMAFGWLQLTGNVGSIIGGLFSVLIAPITVFGIPGWRISFHIVGLISIIVGALVYLFANDPHFSDNGTNSRRQAPNKTFWSEVKDLVQESKSVLKISSFQIIVAQGVTGSFPWSALSFAPMWLELTGFSHEKTAFLMGLFVVASSIGGLFGGKMGDILSKRYPNSGRIILAQISSGSAIPLAALLLIGLPDDPSTIISHGLVLIIMGLLISWNGPATNNPIFAEIVPERSRTSVYAMDRSFESILSSFAPPAVGILAQHVYGYKPIPEGSSESQEILTDRENAASLAKSLYTAIGIPMALCCIIYTFLYRTYPRDRERAKMEALIESEMQLIESGGLAMDREFESEELSIVDYDDGDIDDDENTLLYRQLTLSKE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
