SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G35830 | AT | Annotation by Michelle Graham. TAIR10: VQ motif-containing protein | chr1:13321214-13322122 REVERSE LENGTH=302 | SoyBase | E_val: 3.00E-19 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF05678 | PFAM | VQ motif | JGI | ISS | |
| UniRef100_I1MAS8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAS8_SOYBN | SoyBase | E_val: 1.00E-159 | ISS |
| UniRef100_Q6AVF5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q6AVF5_ORYSJ | SoyBase | E_val: 2.00E-09 | ISS |
|
Glyma14g34681 not represented in the dataset |
Glyma14g34681 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g172200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g34681.1 sequence type=CDS gene model=Glyma14g34681 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCTGGCAACAGTGGAAGTATCTCTTCAAGTGGTGATGAAGAATACGATTCACGAGCTGATCACACAGTACTCCCTTCCACTTTCATCAATAACCACCACCACCACCCTCCTTCCCAATTTGGCTCCATCTCACAACACCCTCTTGTTGCTTCTTCTCATTACCAACAACACCAACCTCACCCTTCTTTGTTTGATCTCTCTCCAAGCTACCTCCACGCCCTCTCTCAACCAAACTCATTCCTCAACTTGGACACCACCACATCCTCGTCGCAACCTCGAAGATCTGAACCCGATTGCACCCTTAATGTTACCTCATCACCACCTCCACCAACAACAACAAACATAGACCAATGTTTGTTGGGTTCTCAAGGAGGCCTCAACGTGGACAATGCAAGACGAGACACAATTCTGTTCGAGTCAGGTAAGACCAGTAACCTTGGTCGCAACTCGAAGAAGCGAACCAGGGCTTCGAGGAGGGCACCAACCACGGTTTTAACCACCGACACATCGAATTTCAGGGCCATGGTTCAAGAGTTCACCGGAATCCCTGCACCACCGTTCTCAGCTTCTTCCTCGTACTCTCGAAGGCTCGATCTTCTCACTGGCTCATCCTCCTTAAGAAGCTTCTCTCACTTAGACACAACAACGGGTCCTTTCTACCCTTTGCGTCCTTCCCCACAAAAGGTACACCATCATCATCATCATCATCAAAACCCATTGCTTTTATCTTCCTCATCATCACCTTATAATAACATGGTTGATGCTATAGCTTCCACTACCACCACCAACAATTCTTCATCTAATAACAACAACAACAACAACAACCCCATTAACTTCCAACAACAACAACTTCCTCCTGATTTGGGTTTACCCTATCATCATAACCCACAGAACATCATGTTGAGCATGCAAGATCACCCTACTCTTGCATTTCACCCTCCTCCACCACCTCTTCATCCTTTTGGGTTCAGTGCAAAGTTACCATCAATTGAGGATCTGGGTATGAGCCATGGCCAAGTCAATAATAATAATCCAAATTTTGTTGCAAGTGGGCATGTAACTTCTGAAGGGGTGCCACTGAGGAGTGTGAACAATGATGGAGGAGGAGCAAGAGATGTTTCGTTAAGGTCATTGGATGGTGGTAGCTGCAAGTTGAACTTTTCTGTGGCTTCTGCGTCCACTAGCTTGAACCATGAGAAGAGCACCTTACAAAATAATAATAACGCTTCTACTGGTACTAGAGGGGAAGGTACCGTGGATTCATGGATTTGTTCTTCTGAATAG
>Glyma14g34681.1 sequence type=predicted peptide gene model=Glyma14g34681 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSGNSGSISSSGDEEYDSRADHTVLPSTFINNHHHHPPSQFGSISQHPLVASSHYQQHQPHPSLFDLSPSYLHALSQPNSFLNLDTTTSSSQPRRSEPDCTLNVTSSPPPPTTTNIDQCLLGSQGGLNVDNARRDTILFESGKTSNLGRNSKKRTRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPFSASSSYSRRLDLLTGSSSLRSFSHLDTTTGPFYPLRPSPQKVHHHHHHHQNPLLLSSSSSPYNNMVDAIASTTTTNNSSSNNNNNNNNPINFQQQQLPPDLGLPYHHNPQNIMLSMQDHPTLAFHPPPPPLHPFGFSAKLPSIEDLGMSHGQVNNNNPNFVASGHVTSEGVPLRSVNNDGGGARDVSLRSLDGGSCKLNFSVASASTSLNHEKSTLQNNNNASTGTRGEGTVDSWICSSE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
