SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma14g34610): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma14g34610): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma14g34610

Feature Type:gene_model
Chromosome:Gm14
Start:43224872
stop:43227935
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10100AT Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:3157980-3160275 FORWARD LENGTH=369 SoyBaseE_val: 1.00E-155ISS
GO:0005992GO-bp Annotation by Michelle Graham. GO Biological Process: trehalose biosynthetic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004805GO-mf Annotation by Michelle Graham. GO Molecular Function: trehalose-phosphatase activity SoyBaseN/AISS
PTHR10788Panther TREHALOSE-6-PHOSPHATE SYNTHASE JGI ISS
PF02358PFAM Trehalose-phosphatase JGI ISS
UniRef100_G7KAB1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Trehalose-6-phosphate phosphatase n=2 Tax=Medicago truncatula RepID=G7KAB1_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MAS4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MAS4_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g34610 not represented in the dataset

Glyma14g34610 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g01910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g171700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma14g34610.2   sequence type=CDS   gene model=Glyma14g34610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAACCGTAATGTGAATAACACGCTTATGGAGTTGGCAATGTCGATTTCAAACAGAAGTGCTCTACCTAGAGCTGCGGTGCCTGGACTAATGGCCTTGTTTGGTGGGGTTTTGGGCCCACCCCAGAAGAAGCTCTTAAGGAAAACTTTAGAAGATGGAAGTGTTAATAAAGGAGGGAACAAAGTTATTAACACATGGATTGATTCAATGAGAGCCTCTTCTCCCACTCGATCTGCCAAATCCACACAAAACAACCAAAACCAAGACCCAACAAGTCCTTGGACTCTTTACCACCCTTCGGCACTGAGCATGTTTGATCATATTGTATGTGAGTCCAAAGGGAAGCAGATTGTGACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGATAAAGCATACATGAGTAAAAAGATGAGGGCCACATTGAAGGACTTAGCAAGGCATTTCCCCACCGCCATAGTGAGTGGAAGGTGCCTAGACAAGGTGTATAACTTTGTAAGATTGGCAGAACTGTACTATGCTGGGAGCCATGGAATGGACATCAAGGGACCAACAAATAAGCGAAGTACTAAGAAAGGAAACGAACAAGTGCTCTTCCAACCCGCTAGTGAATTCTTACCCATGATCAATGAGGTGTACAACATCTTGGTGGAAAAAACAAAGTCTGTCCCTGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAACTGGGCATCATTGGGTGAACAAGTGAGTTTGGTGCTCAACGAGTACCCAAAACTTAAGCTAACTCAAGGGAGAAAAGTGCTTGAGATTCGACCAGCCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAGTCACTAGGATATGCTAATTCTGATAATGTATTTCCAATCTTTATTGGTGATGATCGAACTGACGAAGATGCTTTTAAGGTTTTGCGGAGGAGGGGCCAAGGGATTGGGATTCTTGTTTCTAAAATTACAAAAGAAACCGATGCTTCCTACACTTTGCAAGATCCAACAGAGGTTGGGCAGTTTTTGAGGCATATGGTAGAGTGGAAAAGAACGAGTTCCCAATACCAGAAGTTAGATTCTAGATGA

>Glyma14g34610.2   sequence type=predicted peptide   gene model=Glyma14g34610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNRNVNNTLMELAMSISNRSALPRAAVPGLMALFGGVLGPPQKKLLRKTLEDGSVNKGGNKVINTWIDSMRASSPTRSAKSTQNNQNQDPTSPWTLYHPSALSMFDHIVCESKGKQIVTFLDYDGTLSPIVADPDKAYMSKKMRATLKDLARHFPTAIVSGRCLDKVYNFVRLAELYYAGSHGMDIKGPTNKRSTKKGNEQVLFQPASEFLPMINEVYNILVEKTKSVPGAKVENNKFCLSVHFRCVDEKNWASLGEQVSLVLNEYPKLKLTQGRKVLEIRPAIKWDKGKALEFLLESLGYANSDNVFPIFIGDDRTDEDAFKVLRRRGQGIGILVSKITKETDASYTLQDPTEVGQFLRHMVEWKRTSSQYQKLDSR*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo