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Report for Sequence Feature Glyma14g34545

Feature Type:gene_model
Chromosome:Gm14
Start:43117999
stop:43119287
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75760AT Annotation by Michelle Graham. TAIR10: ER lumen protein retaining receptor family protein | chr1:28446940-28448421 REVERSE LENGTH=272 SoyBaseE_val: 1.00E-44ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006621GO-bp Annotation by Michelle Graham. GO Biological Process: protein retention in ER lumen SoyBaseN/AISS
GO:0015031GO-bp Annotation by Michelle Graham. GO Biological Process: protein transport SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0046923GO-mf Annotation by Michelle Graham. GO Molecular Function: ER retention sequence binding SoyBaseN/AISS
PTHR10585Panther ER LUMEN PROTEIN RETAINING RECEPTOR-RELATED JGI ISS
PTHR10585:SF10Panther ER LUMEN PROTEIN RETAINING RECEPTOR JGI ISS
PF00810PFAM ER lumen protein retaining receptor JGI ISS
UniRef100_B9R890UniRef Annotation by Michelle Graham. Most informative UniRef hit: ER lumen protein retaining receptor, putative n=1 Tax=Ricinus communis RepID=B9R890_RICCO SoyBaseE_val: 1.00E-42ISS
UniRef100_UPI000233BC71UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BC71 related cluster n=1 Tax=unknown RepID=UPI000233BC71 SoyBaseE_val: 5.00E-49ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g34545 not represented in the dataset

Glyma14g34545 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g171200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma14g34545.1   sequence type=CDS   gene model=Glyma14g34545   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTTTCAAATTGAAATCTAGTTATATAGATGATAAGGACAACCTTGCAATATACTATGTGGTAATACCTTGTGTTGTGTTGTCCTTGTTAATTCATCCAATAACCTGGCATCATCCACTTAATAGGATTCTCTGGGCATTTTGTGTTTATCTTGAAGCTGTTTCTGTTCTCCCTCAGCTACAAGTCATGCAGAACACTAAGATTGTTGAACCATTCACAGCACACTATGTTTTTTTCTCTGGGAGTTGCAAGTTTCTTGAGTTGTGCACATTGGGTCCTCCAGGTTTGTCAAAATTTGAACTCCTCTAA

>Glyma14g34545.1   sequence type=predicted peptide   gene model=Glyma14g34545   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRFKLKSSYIDDKDNLAIYYVVIPCVVLSLLIHPITWHHPLNRILWAFCVYLEAVSVLPQLQVMQNTKIVEPFTAHYVFFSGSCKFLELCTLGPPGLSKFELL*







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