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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G78060 | AT | Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase family protein | chr1:29349796-29352868 REVERSE LENGTH=767 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| PF00933 | PFAM | Glycosyl hydrolase family 3 N terminal domain | JGI | ISS | |
| PF01915 | PFAM | Glycosyl hydrolase family 3 C terminal domain | JGI | ISS | |
| UniRef100_G8A378 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Xylan 1 4-beta-xylosidase n=1 Tax=Medicago truncatula RepID=G8A378_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MAR9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAR9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g34480 not represented in the dataset |
Glyma14g34480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g01950 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g170900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g34480.1 sequence type=CDS gene model=Glyma14g34480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTCTTTCTCACTTTTCCGCTGCCATTTTCATCTCTTTCCTTCTCCTCACTCTCCACCACCACGCCGAATCAACTCAGCCTCCCTATTCCTGCGACTCGTCCTCCAACTCACCCTACTACCCATTCTGCAACACCAGGCTCCCCATCAGCAAAAGAGCCCAAGACCTCGTCTCGCGGCTCACTCTCGACGAGAAACTCGCCCAACTCGTCAACACGGCACCGGCGATTCCCCGGCTCGGCATCCCGAGTTACCAGTGGTGGAGTGAAGCGCTGCACGGCGTCGCCGATGCCGGCTTCGGCATCAGATTCAACGGCACCATCAAATCCGCCACCAGTTTCCCCCAAGTCATTCTCACCGCCGCTTCCTTCGACCCAAACCTCTGGTACCAAATCAGCAAGACTATTGGGAAGGAAGCGAGGGCGGTGTACAATGCGGGGCAAGCGACGGGGATGACGTTCTGGGCTCCGAACATAAACGTTTTCAGGGATCCACGGTGGGGGAGAGGGCAAGAGACTGCAGGGGAAGACCCTCTGATGAATGCCAAGTATGGTGTGGCGTATGTGAGAGGGCTTCAAGGGGATTCCTTTGAAGGAGGGAAACTGGGTGAGAGGCTTCAAGCTTCGGCGTGTTGCAAGCACTTCACTGCCTATGATTTGGACCATTGGAAGGGACTAGATCGCTTTGTCTACGATGCTCGTGTCACGTCGCAAGATTTGGCAGACACATACCAACCTCCATTTCAAAGTTGCATAGAGCAAGGTCGAGCCAGTGGGATAATGTGTGCCTACAACCGTGTCAATGGTGTTCCAAACTGTGCAAATTTCAATCTTTTAACCAAAACCGCAAGACAACAATGGAAATTCGATGGGTATATTACGTCAGATTGTGGAGCAGTCTCTATCATTCACGATGAGCAAGGTTATGCAAAAACTGCAGAGGACGCTATAGCCGATGTCTTTAGGGCAGGGATGGATGTGGAGTGTGGTGATTACATAACCAAGCATGGAAAATCAGCAGTGTCCCAGAAAAAACTGCCCATATCTCAAATCGATCGTGCCCTTCAAAACCTCTTCTCCATTAGAATAAGACTAGGCCTATTAGATGGAAACCCCACCAAGCTTCCATTTGGCACAATTGGTCCCGATCAAGTGTGCTCCAAACAAAGCCTCCAACTAGCCCTCGAGGCAGCAAGGGATGGCATAGTCCTTCTAAAGAACACAAACTCACTCCTCCCACTCCCAAAAACAAACCCCACTATTGCCTTAATAGGCCCCAATGCCAATGCCTCATCAAAAGTTTTCCTAGGAAACTATTATGGGCGTCCTTGCAATTTGGTGACACTCTTGCAAGGCTTTGAGGGCTATGCTAAGGACACGGTTTACCACCCGGGGTGTGATGATGGCCCACAATGTGCTTATGCTCAAATAGAAGGGGCAGTGGAAGTTGCAAAAAAGGTTGATTATGTGGTGTTGGTCATGGGGTTGGATCAGAGTCAAGAGAGGGAGTCACATGATAGAGAGTACTTAGGGCTGCCAGGGAAGCAAGAAGAGCTCATTAAGAGTGTGGCTAGGGCTTCAAAGAGACCTGTTGTTTTGGTGCTCTTGTGTGGAGGCCCGGTTGATATCACTTCGGCTAAGTTTGATGATAAGGTTGGAGGGATCTTGTGGGCTGGGTACCCGGGTGAACTTGGAGGAGTGGCACTGGCCCAGGTTGTCTTTGGTGATCATAACCCAGGTGGAAAACTACCAATTACTTGGTACCCAAAAGATTTCATCAAAGTACCAATGACAGACATGAGGATGAGAGCAGATCCAGCATCAGGCTACCCTGGGAGAACCTACAGATTCTACACTGGTCCAAAGGTGTATGAATTTGGCTACGGCCTAAGCTACACAAAATATTCCTACAAGCTCCTCTCTCTCTCACACAACACCCTCCACATCAACCAATCATCCACACATTTAACGACTCAAAATTCTGAAACCATACGCTACAAGCTGGTTTCGGAGTTGGCAGAAGAAACATGCCAAACCATGTTGTTGTCGATCGCATTGGGAGTCACGAATCACGGTAACATGGCGGGGAAGCATCCCGTGTTGCTGTTTGTGAGGCAGGGAAAGGTTAGAAACAATGGGAATCCGGTGAAACAGTTGGTGGGGTTTCAAAGTGTGAAGTTGAATGCAGGGGAAACGGTTCAAGTGGGGTTTGAGCTAAGCCCTTGTGAGCATCTTAGCGTGGCGAATGAGGCTGGTTCGATGGTGATTGAAGAAGGATCTTATTTGTTGCTTGTTGGGGACCAAGAGTACCCAATTGAAATCACTGTTTGA
>Glyma14g34480.1 sequence type=predicted peptide gene model=Glyma14g34480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTLSHFSAAIFISFLLLTLHHHAESTQPPYSCDSSSNSPYYPFCNTRLPISKRAQDLVSRLTLDEKLAQLVNTAPAIPRLGIPSYQWWSEALHGVADAGFGIRFNGTIKSATSFPQVILTAASFDPNLWYQISKTIGKEARAVYNAGQATGMTFWAPNINVFRDPRWGRGQETAGEDPLMNAKYGVAYVRGLQGDSFEGGKLGERLQASACCKHFTAYDLDHWKGLDRFVYDARVTSQDLADTYQPPFQSCIEQGRASGIMCAYNRVNGVPNCANFNLLTKTARQQWKFDGYITSDCGAVSIIHDEQGYAKTAEDAIADVFRAGMDVECGDYITKHGKSAVSQKKLPISQIDRALQNLFSIRIRLGLLDGNPTKLPFGTIGPDQVCSKQSLQLALEAARDGIVLLKNTNSLLPLPKTNPTIALIGPNANASSKVFLGNYYGRPCNLVTLLQGFEGYAKDTVYHPGCDDGPQCAYAQIEGAVEVAKKVDYVVLVMGLDQSQERESHDREYLGLPGKQEELIKSVARASKRPVVLVLLCGGPVDITSAKFDDKVGGILWAGYPGELGGVALAQVVFGDHNPGGKLPITWYPKDFIKVPMTDMRMRADPASGYPGRTYRFYTGPKVYEFGYGLSYTKYSYKLLSLSHNTLHINQSSTHLTTQNSETIRYKLVSELAEETCQTMLLSIALGVTNHGNMAGKHPVLLFVRQGKVRNNGNPVKQLVGFQSVKLNAGETVQVGFELSPCEHLSVANEAGSMVIEEGSYLLLVGDQEYPIEITV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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