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Report for Sequence Feature Glyma14g34430

Feature Type:gene_model
Chromosome:Gm14
Start:42917460
stop:42918085
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g34430
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G39670AT Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein | chr5:15883270-15883884 FORWARD LENGTH=204 SoyBaseE_val: 1.00E-30ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF137Panther CALCIUM-BINDING EF HAND FAMILY PROTEIN JGI ISS
UniRef100_G7JUB9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding mitochondrial carrier protein SCaMC-1 n=1 Tax=Medicago truncatula RepID=G7JUB9_MEDTR SoyBaseE_val: 2.00E-47ISS
UniRef100_I1MAR4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAR4_SOYBN SoyBaseE_val: 7.00E-111ISS

Expression Patterns of Glyma14g34430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g34430 not represented in the dataset
Glyma14g34430 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g34430 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g170400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g34430
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g34430
>Glyma14g34430.1   sequence type=CDS   gene model=Glyma14g34430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTATTCTTAGAGAATTTGACTTCCTTATTTCTGATGGGAAGGGATCTCAGAATTATGGTAACTCAACTTCTCCCTTGTTTGGTTTGGTAGATCTTTCCTTGTACCATACATGTTTCTACAATCTCCAGTGTTTTTCCCTTAGTTTCTGGTGTTTCCTTCTGTACCAACTTTTTTCTAATGACTCAAAGGTGAAGGCAGAGGAGCAGGTATCAAAACCAGGGGTGTTTAGTCACCAAGAGAATGAGTCAAAGGGCAACATAGATAGTGAGAATTATCTTGAGAGGGATGAGGTCAAAATGAACTGTTTTGAGGAGCAGGAGCCAAGTTTGGAGGAGGTGAAGCAGGATTTTGATGTTTTTGATGAGAACAAAGATGGCTTTATTGATGATGAGGAGTTGCAGAGAGTTCTTTGCATTTTGGGATTGAAGGAAGCAGCAAAACTTGAGAACTGCCACAAGATGATCAGGATCTTTGATACAAATCAGGATGGAAGAATATATTTCATTGAATTTGTAAAAATTATGGAAAATTGCTTCCGCTAA
Predicted protein sequences of Glyma14g34430
>Glyma14g34430.1   sequence type=predicted peptide   gene model=Glyma14g34430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVILREFDFLISDGKGSQNYGNSTSPLFGLVDLSLYHTCFYNLQCFSLSFWCFLLYQLFSNDSKVKAEEQVSKPGVFSHQENESKGNIDSENYLERDEVKMNCFEEQEPSLEEVKQDFDVFDENKDGFIDDEELQRVLCILGLKEAAKLENCHKMIRIFDTNQDGRIYFIEFVKIMENCFR*






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