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Report for Sequence Feature Glyma14g34385

Feature Type:gene_model
Chromosome:Gm14
Start:42867366
stop:42869377
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g34385
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G11400AT Annotation by Michelle Graham. TAIR10: partner of Y14-MAGO | chr1:3838777-3839978 FORWARD LENGTH=204 SoyBaseE_val: 9.00E-43ISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0010628GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of gene expression SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005654GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG4325 KOG Uncharacterized conserved protein JGI ISS
PTHR22959Panther PYM PROTEIN JGI ISS
PF09282PFAM Mago binding JGI ISS
PF10250PFAM GDP-fucose protein O-fucosyltransferase JGI ISS
UniRef100_D7KME2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Partner of Y14-mago n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KME2_ARALL SoyBaseE_val: 2.00E-41ISS
UniRef100_I1MAR3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MAR3_SOYBN SoyBaseE_val: 4.00E-94ISS

Expression Patterns of Glyma14g34385
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g34385 not represented in the dataset
Glyma14g34385 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g34385 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g170300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g34385
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g34385
>Glyma14g34385.1   sequence type=CDS   gene model=Glyma14g34385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTGTAGAACCCTTGCTTCTTCTTATTTTCCTCTCAATCTTCTTTCTTTTCTCTCTCACTCCGTGTTCCTCTTTCTCGCAGTAGGTAAGCAAGTTCACACTCCAAATTCCATTTCGAAACTTCACCAGCTTCAACGCTCGAGCAAAAGCCTCAAAGAAGGAGAAAGGCTCGTGGGCCCAATGAGACGGCCCGACGAAACCCTCTGCAAGCCCATTCGAATCCGCGCCGGCTACACCCCTCAAGACGAAGTCACCATTTACCAACCCAAAGGAGCACTCTTGAAAAAGGAGATGGGCTCCGTTGGGCCTCCCGGGTACGAACCAGACGCTGATTCCAAGCCCAAGACCAAGTCCGTTAAGAGGAACGAGAGAAAGAAGGAAAAGCGCATTCAGGCTGCGCTTGAAAAGGAAAAGAATGTGAGTGAAGTTGAAGATAGTGGAAAGCAGGAATCTCTGGAGGCATTGACCTCGCAGGTAAATCGGCTCACTTTGCAAGATTCGCCCCAAGCTCAAGATATTGATAAAAGAATTTGTGCTCTCAAAAAGAAGATAAGTGACATGGTTGCTATTGCAAAAATTATGAAAGCCACTTTGGTTTTTCCTACATTGGATCATGATTCCTTTTGGACAAATTCTAGTGATTTTAAGCAAATTTTTGACTGGAAGAACTTCACTGAAGTTTTAAAAGATGATGTTCAAATAGTGGAATCTCTATCACCAGAATTTGCAACAATTAAGCCAGTTTTGAAGGCTCCGGCAGGTTATAACGCAGGGGAGGTGCTGCAATTATTGAAGAAACACAAAGTGATCAAATTTACCTGA
Predicted protein sequences of Glyma14g34385
>Glyma14g34385.1   sequence type=predicted peptide   gene model=Glyma14g34385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLCRTLASSYFPLNLLSFLSHSVFLFLAVGKQVHTPNSISKLHQLQRSSKSLKEGERLVGPMRRPDETLCKPIRIRAGYTPQDEVTIYQPKGALLKKEMGSVGPPGYEPDADSKPKTKSVKRNERKKEKRIQAALEKEKNVSEVEDSGKQESLEALTSQVNRLTLQDSPQAQDIDKRICALKKKISDMVAIAKIMKATLVFPTLDHDSFWTNSSDFKQIFDWKNFTEVLKDDVQIVESLSPEFATIKPVLKAPAGYNAGEVLQLLKKHKVIKFT*






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