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Report for Sequence Feature Glyma14g34131

Feature Type:gene_model
Chromosome:Gm14
Start:42474421
stop:42475484
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63280AT Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein | chr5:25367085-25368848 FORWARD LENGTH=271 SoyBaseE_val: 2.00E-34ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR21385Panther ZINC FINGER PROTEIN-RELATED JGI ISS
UniRef100_B6STE4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein n=1 Tax=Zea mays RepID=B6STE4_MAIZE SoyBaseE_val: 1.00E-37ISS
UniRef100_UPI000233B0B2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B0B2 related cluster n=1 Tax=unknown RepID=UPI000233B0B2 SoyBaseE_val: 1.00E-69ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g34131 not represented in the dataset

Glyma14g34131 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g02180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g168600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma14g34131.1   sequence type=CDS   gene model=Glyma14g34131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAGTCATGGTAAGTGCTTGGCTGATTTATGTGGGGCATTGCATTGTGATGCTGTGATGAATTTCAAATCCTCTAGAAGCAAGTGCAATCCGGTAGCTGCTGCAAGAAACCGTCGTCTATGTGAGAGTCTTGCTGACAACTGTTTTCCTATAAGTGAGGGTCCATCAGCAGGCTGCCTTCACGAATTATTTCTGCACCAAATTTGTGACACTTGCTCAGAGAAACATAAACCCTTCTCTAGAGGAGGCAAGGATCAAAGTAGTTTCTTCCGCCTGGCTGCTGGAGCATTGATCTTGGTGCTACTTCCTGTGTTCCAACTTTTTCTTTATTTGGTACAAAGTGACGTGAAGAGTTGA

>Glyma14g34131.1   sequence type=predicted peptide   gene model=Glyma14g34131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSHGKCLADLCGALHCDAVMNFKSSRSKCNPVAAARNRRLCESLADNCFPISEGPSAGCLHELFLHQICDTCSEKHKPFSRGGKDQSSFFRLAAGALILVLLPVFQLFLYLVQSDVKS*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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