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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma14g34100

Feature Type:gene_model
Chromosome:Gm14
Start:42453690
stop:42465407
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10080AT Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein | chr5:3150843-3153380 FORWARD LENGTH=528 SoyBaseE_val: 3.00E-174ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0031225GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane SoyBaseN/AISS
GO:0046658GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane SoyBaseN/AISS
GO:0004190GO-mf Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity SoyBaseN/AISS
KOG1339 KOG Aspartyl protease JGI ISS
PTHR13683Panther ASPARTYL PROTEASES JGI ISS
PTHR13683:SF98Panther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED JGI ISS
PF00026PFAM Eukaryotic aspartyl protease JGI ISS
UniRef100_G7KA08UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase-like protein n=1 Tax=Medicago truncatula RepID=G7KA08_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233BC64UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BC64 related cluster n=1 Tax=unknown RepID=UPI000233BC64 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g34100 not represented in the dataset

Glyma14g34100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g02190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g168500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma14g34100.2   sequence type=transcript   gene model=Glyma14g34100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAATAGGCATCCCAAGTTATAATAAACAAACTCTATGCAACAGAGTACATACAACAGATTAGACACATGCCTCCCCCCTCTATCCCTTCGCCACGTTCACGGGAAAACACTATTGGAACCCACAAAGGTGCACACTGCGCACCCGATCCCCGCCACCACCCTCTCTAGTCTCTCCCCTGAAGAAGAAAAAATAAAATAAAATAAAGAAAGCAAGCTTCAAAGTTTCAAACTTTGCACCACCCCACCTCCAATTTCAAGGACCAGAACTCATTTTTCCCCAATTTAAATCCTTTTTCGCTACCCATTTTGGGTTTTGGTTCGTGTAACTTCTACTTCTGGAACTAAAGTTGAGCTTTTTACCTTATTTGGGTTCTTTGTGTTTAGCTTTTTTTTTTTTTCCTTCTTTTTCATGGCGATTGGGCTTCTTCTGTGGCTGTTACTGGCCAAGGGTCTTGCCATGGAGGGTGCCGTGGGGGTCACATTTTCTTCTAGGCTCATTCACCGTTTCTCTGAGGAGGCTAAGGCTCATTTGGCTTCAAGGGGCAGCGACGGTTCTGTGCTTCTTCAAGCGTGGCCTGAGAGGAACAGCTCTGAGTATTTCAGGTTGCTTCTTAGAAGTGACGTGACACGGCAGAGGATGAGGCTTGGCTCGCAGTATGAGATGCTGTACCCTTTTGAAGGTGGCCAGACCTTTTTGTTTGGCAATGCGCTTTATTGATGCTCTCTTTTATATGGGGGCATCTCTAATGCAGGACAGGGATCTGAATCAGTATAGACCATCATTATCCAACACCAGCAGACATCTACCTTGTGGTCATAAGTTGTGTGATGTCCATTCCGTTTGCAAAGGCTCTAAGGATCCTTGCCCTTATGCAGTTCAGTATTCCTCAGCCAATACCTCAAGTTCTGGATATGTCTTCGAAGACAAACTACATTTGACATCCAATGGAAAACATGCAGAACAAAATTCGGTGCAAGCCTCTATCATTTTAGGTTGTGGAAGGAAACAAACTGGTGAATATTTACGCGGAGCTGGTCCTGATGGTGTTCTAGGGCTAGGACCTGGAAACATTTCAGTCCCAAGTTTACTGGCAAAGGCAGGACTTATTCAGAATTCCTTTTCAATCTGTTTCGAAGAGAATGAATCTGGGAGAATTATCTTTGGTGACCAAGGTCATGTCACCCAACATTCAACACCCTTTTTACCCATAGATGGGAAATTTAATGCTTATATTGTTGGAGTAGAGAGCTTTTGTGTTGGGAGCTTATGTCTCAAGGAAACTAGGTTTCAAGCACTTATTGACAGTGGATCTTCTTTCACATTTCTTCCCAATGAAGTTTATCAAAAAGTTGTAATTGAGTTTGACAAACAAGTAAATGCAACCAGTATTGTTCTCCAAAATTCATGGGAGTACTGCTATAATGCCAGTTCACAGGAGTTGATTAGCATTCCCCCATTGAATCTCGCTTTCTCTAGGAATCAAACCTATTTAATTCAAAATCCTATTTTTATTGATCCTGCCAGTCAGGAACAGGAATACACCATCTTTTGTTTGCCTGTAAGCCCTTCTGATGACGACTATGCTGCCATTGGACAGAACTTCCTGATGGGTTATCGAATGGTCTTTGATCGGGAGAATCTAAGGTTTAGCTGGTCTAGATGGAATTGCCAAGATAGAGCAAGTTTCTCATCACCTTACAGTGTTGGATCACCAAACCCTTTACCGGTGGATCAGCAGCAGAGTTTCCCTAATGCTCATGGCATACCGCCTGCCATTGCTGGACACACGTCCCCCAAACCCTCTGCAGCCACACCTGAACTTATTACCTCTAGGCATTCCTTAGTTTCATTGTTACTGATATGTCACCTTTGGCTTTGGTTATTTTGTTAAGTCTTATCTTATTTGCTTGTAAATTTATCTCGTGTCCAGACTTAAAACCTATGAGGTTTAGTTTTTCAATTTTGTAGGCTGTTGTATCTATTGGGGTTAGTGTGTTAGTGAGGTACTTTTATTTATTTTGGTATATTCTTTCGGTTGTAGTCCCTTTTTATTCTCTTTCCTATGTATCTTTTTGTTCTGCTAGTGCACTCCCTCTTCTCTTGGGCTTTTCTGATTATGAGC

>Glyma14g34100.1   sequence type=CDS   gene model=Glyma14g34100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGATTGGGCTTCTTCTGTGGCTGTTACTGGCCAAGGGTCTTGCCATGGAGGGTGCCGTGGGGGTCACATTTTCTTCTAGGCTCATTCACCGTTTCTCTGAGGAGGCTAAGGCTCATTTGGCTTCAAGGGGCAGCGACGGTTCTGTGCTTCTTCAAGCGTGGCCTGAGAGGAACAGCTCTGAGTATTTCAGGTTGCTTCTTAGAAGTGACGTGACACGGCAGAGGATGAGGCTTGGCTCGCAGTATGAGATGCTGTACCCTTTTGAAGGTGGCCAGACCTTTTTGTTTGGCAATGCGCTTTATTGGTTGCATTACACATGGATTGATATAGGGACTCCAAATGTTTCATTTCTTGTAGCATTAGATGCTGGAAGTGACATGCTTTGGGTTCCCTGTGACTGCATTGAATGTGCTTCCCTGTCTGCCGGTAATTACAATGTGTTGGACAGGGATCTGAATCAGTATAGACCATCATTATCCAACACCAGCAGACATCTACCTTGTGGTCATAAGTTGTGTGATGTCCATTCCGTTTGCAAAGGCTCTAAGGATCCTTGCCCTTATGCAGTTCAGTATTCCTCAGCCAATACCTCAAGTTCTGGATATGTCTTCGAAGACAAACTACATTTGACATCCAATGGAAAACATGCAGAACAAAATTCGGTGCAAGCCTCTATCATTTTAGGTTGTGGAAGGAAACAAACTGGTGAATATTTACGCGGAGCTGGTCCTGATGGTGTTCTAGGGCTAGGACCTGGAAACATTTCAGTCCCAAGTTTACTGGCAAAGGCAGGACTTATTCAGAATTCCTTTTCAATCTGTTTCGAAGAGAATGAATCTGGGAGAATTATCTTTGGTGACCAAGGTCATGTCACCCAACATTCAACACCCTTTTTACCCATAGATGGGAAATTTAATGCTTATATTGTTGGAGTAGAGAGCTTTTGTGTTGGGAGCTTATGTCTCAAGGAAACTAGGTTTCAAGCACTTATTGACAGTGGATCTTCTTTCACATTTCTTCCCAATGAAGTTTATCAAAAAGTTGTAATTGAGTTTGACAAACAAGTAAATGCAACCAGTATTGTTCTCCAAAATTCATGGGAGTACTGCTATAATGCCAGTTCACAGGAGTTGATTAGCATTCCCCCATTGAATCTCGCTTTCTCTAGGAATCAAACCTATTTAATTCAAAATCCTATTTTTATTGATCCTGCCAGTCAGGAACAGGAATACACCATCTTTTGTTTGCCTGTAAGCCCTTCTGATGACGACTATGCTGCCATTGGACAGAACTTCCTGATGGGTTATCGAATGGTCTTTGATCGGGAGAATCTAAGGTTTAGCTGGTCTAGATGGAATTGCCAAGATAGAGCAAGTTTCTCATCACCTTACAGTGTTGGATCACCAAACCCTTTACCGGTGGATCAGCAGCAGAGTTTCCCTAATGCTCATGGCATACCGCCTGCCATTGCTGGACACACGTCCCCCAAACCCTCTGCAGCCACACCTGAACTTATTACCTCTAGGCATTCCTTAGTTTCATTGTTACTGATATGTCACCTTTGGCTTTGGTTATTTTGTTAA

>Glyma14g34100.2   sequence type=CDS   gene model=Glyma14g34100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATGCTGTACCCTTTTGAAGGTGGCCAGACCTTTTTGTTTGGCAATGCGCTTTATTGATGCTCTCTTTTATATGGGGGCATCTCTAATGCAGGACAGGGATCTGAATCAGTATAGACCATCATTATCCAACACCAGCAGACATCTACCTTGTGGTCATAAGTTGTGTGATGTCCATTCCGTTTGCAAAGGCTCTAAGGATCCTTGCCCTTATGCAGTTCAGTATTCCTCAGCCAATACCTCAAGTTCTGGATATGTCTTCGAAGACAAACTACATTTGACATCCAATGGAAAACATGCAGAACAAAATTCGGTGCAAGCCTCTATCATTTTAGGTTGTGGAAGGAAACAAACTGGTGAATATTTACGCGGAGCTGGTCCTGATGGTGTTCTAGGGCTAGGACCTGGAAACATTTCAGTCCCAAGTTTACTGGCAAAGGCAGGACTTATTCAGAATTCCTTTTCAATCTGTTTCGAAGAGAATGAATCTGGGAGAATTATCTTTGGTGACCAAGGTCATGTCACCCAACATTCAACACCCTTTTTACCCATAGATGGGAAATTTAATGCTTATATTGTTGGAGTAGAGAGCTTTTGTGTTGGGAGCTTATGTCTCAAGGAAACTAGGTTTCAAGCACTTATTGACAGTGGATCTTCTTTCACATTTCTTCCCAATGAAGTTTATCAAAAAGTTGTAATTGAGTTTGACAAACAAGTAAATGCAACCAGTATTGTTCTCCAAAATTCATGGGAGTACTGCTATAATGCCAGTTCACAGGAGTTGATTAGCATTCCCCCATTGAATCTCGCTTTCTCTAGGAATCAAACCTATTTAATTCAAAATCCTATTTTTATTGATCCTGCCAGTCAGGAACAGGAATACACCATCTTTTGTTTGCCTGTAAGCCCTTCTGATGACGACTATGCTGCCATTGGACAGAACTTCCTGATGGGTTATCGAATGGTCTTTGATCGGGAGAATCTAAGGTTTAGCTGGTCTAGATGGAATTGCCAAGATAGAGCAAGTTTCTCATCACCTTACAGTGTTGGATCACCAAACCCTTTACCGGTGGATCAGCAGCAGAGTTTCCCTAATGCTCATGGCATACCGCCTGCCATTGCTGGACACACGTCCCCCAAACCCTCTGCAGCCACACCTGAACTTATTACCTCTAGGCATTCCTTAGTTTCATTGTTACTGATATGTCACCTTTGGCTTTGGTTATTTTGTTAA

>Glyma14g34100.1   sequence type=predicted peptide   gene model=Glyma14g34100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIGLLLWLLLAKGLAMEGAVGVTFSSRLIHRFSEEAKAHLASRGSDGSVLLQAWPERNSSEYFRLLLRSDVTRQRMRLGSQYEMLYPFEGGQTFLFGNALYWLHYTWIDIGTPNVSFLVALDAGSDMLWVPCDCIECASLSAGNYNVLDRDLNQYRPSLSNTSRHLPCGHKLCDVHSVCKGSKDPCPYAVQYSSANTSSSGYVFEDKLHLTSNGKHAEQNSVQASIILGCGRKQTGEYLRGAGPDGVLGLGPGNISVPSLLAKAGLIQNSFSICFEENESGRIIFGDQGHVTQHSTPFLPIDGKFNAYIVGVESFCVGSLCLKETRFQALIDSGSSFTFLPNEVYQKVVIEFDKQVNATSIVLQNSWEYCYNASSQELISIPPLNLAFSRNQTYLIQNPIFIDPASQEQEYTIFCLPVSPSDDDYAAIGQNFLMGYRMVFDRENLRFSWSRWNCQDRASFSSPYSVGSPNPLPVDQQQSFPNAHGIPPAIAGHTSPKPSAATPELITSRHSLVSLLLICHLWLWLFC*

>Glyma14g34100.2   sequence type=predicted peptide   gene model=Glyma14g34100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRCCTLLKVARPFCLAMRFIDALFYMGASLMQDRDLNQYRPSLSNTSRHLPCGHKLCDVHSVCKGSKDPCPYAVQYSSANTSSSGYVFEDKLHLTSNGKHAEQNSVQASIILGCGRKQTGEYLRGAGPDGVLGLGPGNISVPSLLAKAGLIQNSFSICFEENESGRIIFGDQGHVTQHSTPFLPIDGKFNAYIVGVESFCVGSLCLKETRFQALIDSGSSFTFLPNEVYQKVVIEFDKQVNATSIVLQNSWEYCYNASSQELISIPPLNLAFSRNQTYLIQNPIFIDPASQEQEYTIFCLPVSPSDDDYAAIGQNFLMGYRMVFDRENLRFSWSRWNCQDRASFSSPYSVGSPNPLPVDQQQSFPNAHGIPPAIAGHTSPKPSAATPELITSRHSLVSLLLICHLWLWLFC*







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