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Report for Sequence Feature Glyma14g34080

Feature Type:gene_model
Chromosome:Gm14
Start:42435554
stop:42436072
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
ATCG00020AT Annotation by Michelle Graham. TAIR10: photosystem II reaction center protein A | chrC:383-1444 REVERSE LENGTH=353 SoyBaseE_val: 2.00E-116ISS
GO:0006091GO-bp Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy SoyBaseN/AISS
GO:0006354GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation SoyBaseN/AISS
GO:0009772GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem II SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009523GO-cc Annotation by Michelle Graham. GO Cellular Compartment: photosystem II SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0010287GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0030076GO-cc Annotation by Michelle Graham. GO Cellular Compartment: light-harvesting complex SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016168GO-mf Annotation by Michelle Graham. GO Molecular Function: chlorophyll binding SoyBaseN/AISS
GO:0045156GO-mf Annotation by Michelle Graham. GO Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity SoyBaseN/AISS
PF00124PFAM Photosynthetic reaction centre protein JGI ISS
UniRef100_I1MAQ2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MAQ2_SOYBN SoyBaseE_val: 9.00E-123ISS
UniRef100_I1SZS9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Photosystem II D1 protein (Fragment) n=1 Tax=Damasonium californicum RepID=I1SZS9_9LILI SoyBaseE_val: 9.00E-115ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g34080 not represented in the dataset

Glyma14g34080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma14g34080.1   sequence type=CDS   gene model=Glyma14g34080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTATTGATGAATGGTTATATAACGGCGATCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTCGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTTATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTTAGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTCCTTGGTAACTTCTTGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCAT

>Glyma14g34080.1   sequence type=predicted peptide   gene model=Glyma14g34080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAIIPTSAAIGLHFYPIWEAASIDEWLYNGDPYELIVLHFLLGVACYMGREWELSFRLGMRPSIAVAYSAPVAAATAVFFIYPIGQGSFSDGMPLGILGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSDMHGSLVTSCLIRETTENESANEGYRFGQEEETYNIVAAH







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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