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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma14g33960

Feature Type:gene_model
Chromosome:Gm14
Start:42373987
stop:42376973
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G22040AT Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein | chr1:7768370-7769797 FORWARD LENGTH=475 SoyBaseE_val: 0ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR24414Panther FAMILY NOT NAMED JGI ISS
PTHR24414:SF196Panther JGI ISS
PF00646PFAM F-box domain JGI ISS
PF01344PFAM Kelch motif JGI ISS
UniRef100_B9H772UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=B9H772_POPTR SoyBaseE_val: 0ISS
UniRef100_I1MAQ0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MAQ0_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g33960 not represented in the dataset

Glyma14g33960 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g02210 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g167900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma14g33960.1   sequence type=CDS   gene model=Glyma14g33960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTTTGTTTAGTATGGCTAATACAAAGGCCAATCAAAGTGAGTCTAGTGCAACCTCACCAAATGAGACCTCTAAGAGGCAAAGAATGTCACCTGCCTCTGTTGAAGAATGTCCAAGACTTATTCCTAATATCCCGGATGAGTTATCCCTTCAGATTATTGCTAGACTTCCTAGAATTTGTTACTACCATGTAAGGCTGGTGTCTAGGAGGTGGAAAACAACTATAACGAGTTTGGAATTATATAAAGTAAGAAAAGAGCTTGGTACAACTGAAGAATGGCTATATCTGTTGGTTAGGATTGGACAAAATAAACTCTTATGGCATGCTCTAGACCCCCGTTCTCGAATATGGCAGAGATTGCCTATTATGCCCAGAGTTGTCGATGAAGAAGATTCCCAAAAGGTTTCTTCTAGGCTTTGGATGTGGAACATGGTCGAAGGTATCAGAATTGCTGAAATTATTAGAGGTCTGCTTGGACAGAAGGATGTATTGGATGACATGCCCTTTTGTGGTTGTGCTTTTGGAGCTGTTGATGGATGTCTTTATATTCTAGGTGGATTCTCTAAAGCTTCAACTATGAAATGTGTATGGCGATTTGATCCGATACAAAACTCATGGAAGAAGGTGAATTCTATGTCTACAGGTAGGGCATATTGTAAGACAGGTGTCTTGAATAACATGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCAAGCTGGATTGATTCCTCTTCAATCTGCTGAAGTTTTTGACCCCTTCAAGGATACATGGTCCGACGTACCTAGTATGCCATTCTCAAGAGCTGGAGTCCTGCCCACAGCTTTTTTGGCTGACATGTTAAAGCCTATTGCCACCGGGTTAAGCTCGTACAAGGGAAGGTTATATGTTCCCCAAAGTTTGTATTCATGGCCATTTTTTGTTGATGTTGGAGGAGAAATATATGATCCTGAAACAAATTCATGGATGGAAATGCCAAATGGAATGGGTGAGGGATGGCCCATTAAGCAAGCAGGAACCAAACTGAGTGTTGTAGTGAATGGTGAATTATATGCTTTTGATCCTTCAAATTCTGTGGATAGTGGAAGGATCAAGGTATATGATCAAGGAGAGGATGCATGGAAAGTTGTTATTGGAAAAGTCCCTGTATATGATTTTACGGAATTGGAGTATCCATATCTACTAGCTGGTTTCCATGGAAAGCTTCATTTCATCACAAAAGATGCCAATCATGATATTTCTGTTCTGCAGGCTGACCTGTGCAGTAATTTGGATTCTTCACAATCAACCTCGACACCTCAATCACCCAAATCCATGGAGGATGAATTGTTGCAAGAATCAACTGAAACAGATGAAGTTATTTGGAAACTAGTTGCAAGTAAGGGTTTTGGGCAGGCCGAACTTATCAATTGCCAAGTTATTGATATCTAG

>Glyma14g33960.1   sequence type=predicted peptide   gene model=Glyma14g33960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSLFSMANTKANQSESSATSPNETSKRQRMSPASVEECPRLIPNIPDELSLQIIARLPRICYYHVRLVSRRWKTTITSLELYKVRKELGTTEEWLYLLVRIGQNKLLWHALDPRSRIWQRLPIMPRVVDEEDSQKVSSRLWMWNMVEGIRIAEIIRGLLGQKDVLDDMPFCGCAFGAVDGCLYILGGFSKASTMKCVWRFDPIQNSWKKVNSMSTGRAYCKTGVLNNMLYVVGGVSQGQAGLIPLQSAEVFDPFKDTWSDVPSMPFSRAGVLPTAFLADMLKPIATGLSSYKGRLYVPQSLYSWPFFVDVGGEIYDPETNSWMEMPNGMGEGWPIKQAGTKLSVVVNGELYAFDPSNSVDSGRIKVYDQGEDAWKVVIGKVPVYDFTELEYPYLLAGFHGKLHFITKDANHDISVLQADLCSNLDSSQSTSTPQSPKSMEDELLQESTETDEVIWKLVASKGFGQAELINCQVIDI*







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