Glyma14g33820 - SoyBase

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Report for Sequence Feature Glyma14g33820

Feature Type:	gene_model
Chromosome:	Gm14
Start:	42080725
stop:	42093498
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g33820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G08540	AT	Annotation by Michelle Graham. TAIR10: DNA-directed RNA polymerase II protein \| chr4:5433760-5436326 FORWARD LENGTH=473	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21297	Panther	DNA-DIRECTED RNA POLYMERASE II	JGI		ISS
UniRef100_B9T6K6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis RepID=B9T6K6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MAP2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAP2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g33820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g33820

Paralog	Evidence	Comments
Glyma13g02290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g33820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g167200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g33820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g33820

Limit To All Plant Sequences

>Glyma14g33820.2   sequence type=transcript   gene model=Glyma14g33820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGAAAACGGAGATGCAAGCGGGTGCGTGGCCATTGTTTCCGCGATCATCTTCATCGATTGTGCTAGAGTTTTCGAAGTTCCACTTTCCCTTTGTTTCTTCTCACTCATCAAATTTCTTCATCGCCAATGCGTTTCCGAAACCGATAATTGACCCTATTCAACGCAAAATCGCAGTTCCTCCATAGTTTTGTTTCGCTAACTCGAAGGCTTTATCTACACGACACGACGCGTTCTTCCTTTGTGAGAAGCTGGAGATGGCGAGGAAAACTAGTAACTGTGCCATATGCGAGAATTCGAATCAAGCTTCCATTTGTTCCATCTGTGTCAACTACAGGTTGAATGAGTATAATACTTCATTAAAGTTACTGAAAGACCGTCGAGATTCGTTGTACTTAAAATTGAGCGAAGTTCTTGTCCGCAAGGGAAAGGGAGATGATCAAGCAAATTGGAGAGTGCTTCAACATGAAAAGCTTGCAAGGTTGAAGGAGAAACTTCGTCAGAGTAAAGAACAAGTTACTCAAGGAAGAGCTAAGATAGAGACCATGTCTGCTGATCTAAAACTTAAATATGGGTTGCTTGAATCTGCCCTTTCTACGTTGGAAAAGAATCGAGTGGAACAGCTGGAGAAATTCTATCCTAATCTTATATGCACCCAGAGCTTAGGGCATGTGGCGATTACCTCTGAGCTTCTTCATAAAGAGTCTGTGGTCATAAAACAGATATGCAAGTTGTTCCCACAACGCCGGGTGGTCATAGAGGGAGAGAGAAGGGATGGTTGTAGTGGTCAATATGATCAAATTTGCAATGCACGATTACCTCGAGCACTTGATCCCCACTCTGTTCCATCAGAAGAGCTTTCCACTTCTTTGGGATACATGGTGCAACTTCTAAATCTTGTTATTCACAACTTGGCTGCCCCAGCACTTCATAACTCAGGTTTTGCGGGTTCTTGCTCTCGGATATGGCAACGAGATTCTTATTGGGATGCACGTCCTTCCTCAAGGAGCAATGAATATCCCCTTTTTATACCTCGCCAAAATTATTGCTCTACTGACGGAGAAAACTCATGGTCTGAGAGAAGCTCAAGCAATTTTGGAGTTGCTTCGGTGGAATCTGAGAGGAGGCATCGCCTAGATTCATCTGGGAGTACTAGCTTTAATTATTCTTTGGCTTCTTCGCATTCTGTTCAAACACACAAAGATTTGCAGAAAGGAATTTCACTTCTAAAGAAAAGCGTAGTCTGCATCACAGCTTACTGTTACAACTCCCTGTGTTTAGATGTCCCTTCTGAGGCATCTACATTTGAGGCTTTTGCAAAGTTATTGGCAACACTCGCATCATCCAAGGAAGTTCGATCTGTTTTTTCCTTGAAAATGGCTCGCTCTAGGTATTGTTATATTTATTTCATGATACTTTATACACATTGTAAAAATGTTAGTAATTTTTTACAAATTAACCTTATTCTGACAGAATTCTGATGTCTTAAGAAGCATTGATATATCAATTAGTTACAACAACAAAAGCCTTATCCCTCTTGCTGAGGTTGATTACATGATCACATGATGCCATTCGGCCTGGTTAAAGATCAAATCTTCAAAGATATTATTTATTTATCATGAGTTCCCTCTTAACAACTTCCTCCAATGTTGGTTTCCCTCCTTTCCACTGGATTAAAAACTACGCAATCTACT

Coding sequences of Glyma14g33820

Limit To All Plant Sequences

>Glyma14g33820.1   sequence type=CDS   gene model=Glyma14g33820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGGAAAACTAGTAACTGTGCCATATGCGAGAATTCGAATCAAGCTTCCATTTGTTCCATCTGTGTCAACTACAGGTTGAATGAGTATAATACTTCATTAAAGTTACTGAAAGACCGTCGAGATTCGTTGTACTTAAAATTGAGCGAAGTTCTTGTCCGCAAGGGAAAGGGAGATGATCAAGCAAATTGGAGAGTGCTTCAACATGAAAAGCTTGCAAGGTTGAAGGAGAAACTTCGTCAGAGTAAAGAACAAGTTACTCAAGGAAGAGCTAAGATAGAGACCATGTCTGCTGATCTAAAACTTAAATATGGGTTGCTTGAATCTGCCCTTTCTACGTTGGAAAAGAATCGAGTGGAACAGCTGGAGAAATTCTATCCTAATCTTATATGCACCCAGAGCTTAGGGCATGTGGCGATTACCTCTGAGCTTCTTCATAAAGAGTCTGTGGTCATAAAACAGATATGCAAGTTGTTCCCACAACGCCGGGTGGTCATAGAGGGAGAGAGAAGGGATGGTTGTAGTGGTCAATATGATCAAATTTGCAATGCACGATTACCTCGAGCACTTGATCCCCACTCTGTTCCATCAGAAGAGCTTTCCACTTCTTTGGGATACATGGTGCAACTTCTAAATCTTGTTATTCACAACTTGGCTGCCCCAGCACTTCATAACTCAGGTTTTGCGGGTTCTTGCTCTCGGATATGGCAACGAGATTCTTATTGGGATGCACGTCCTTCCTCAAGGAGCAATGAATATCCCCTTTTTATACCTCGCCAAAATTATTGCTCTACTGACGGAGAAAACTCATGGTCTGAGAGAAGCTCAAGCAATTTTGGAGTTGCTTCGGTGGAATCTGAGAGGAGGCATCGCCTAGATTCATCTGGGAGTACTAGCTTTAATTATTCTTTGGCTTCTTCGCATTCTGTTCAAACACACAAAGATTTGCAGAAAGGAATTTCACTTCTAAAGAAAAGCGTAGTCTGCATCACAGCTTACTGTTACAACTCCCTGTGTTTAGATGTCCCTTCTGAGGCATCTACATTTGAGGCTTTTGCAAAGTTATTGGCAACACTCGCATCATCCAAGGAAGTTCGATCTGTTTTTTCCTTGAAAATGGCTCGCTCTAGGACATGCAAGCAAGTTCAACAATTGAACAAGTCTGTTTGGAATATGAATTCGGCTATTTCATCAACTACTTTGCTGGAAAGTGCACATTCTGTGCCCACAACGAGAATTGAAAATTATCTGCCAAGTTCTACTGGTAGTTTTCTTTATGCCGCTGATTTATCTGACGGCAAAAATGAGTGCCTAATTGAAGGGTGGGATATTGTTGAGCATCCCACTTTTCCTCCCCCACCATCGCAAAGTGAGGATGTTGAGCACTGGACTCGAGCCATGTTCATAGATGCTAAAGGGAAGTGA

>Glyma14g33820.2   sequence type=CDS   gene model=Glyma14g33820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGGAAAACTAGTAACTGTGCCATATGCGAGAATTCGAATCAAGCTTCCATTTGTTCCATCTGTGTCAACTACAGGTTGAATGAGTATAATACTTCATTAAAGTTACTGAAAGACCGTCGAGATTCGTTGTACTTAAAATTGAGCGAAGTTCTTGTCCGCAAGGGAAAGGGAGATGATCAAGCAAATTGGAGAGTGCTTCAACATGAAAAGCTTGCAAGGTTGAAGGAGAAACTTCGTCAGAGTAAAGAACAAGTTACTCAAGGAAGAGCTAAGATAGAGACCATGTCTGCTGATCTAAAACTTAAATATGGGTTGCTTGAATCTGCCCTTTCTACGTTGGAAAAGAATCGAGTGGAACAGCTGGAGAAATTCTATCCTAATCTTATATGCACCCAGAGCTTAGGGCATGTGGCGATTACCTCTGAGCTTCTTCATAAAGAGTCTGTGGTCATAAAACAGATATGCAAGTTGTTCCCACAACGCCGGGTGGTCATAGAGGGAGAGAGAAGGGATGGTTGTAGTGGTCAATATGATCAAATTTGCAATGCACGATTACCTCGAGCACTTGATCCCCACTCTGTTCCATCAGAAGAGCTTTCCACTTCTTTGGGATACATGGTGCAACTTCTAAATCTTGTTATTCACAACTTGGCTGCCCCAGCACTTCATAACTCAGGTTTTGCGGGTTCTTGCTCTCGGATATGGCAACGAGATTCTTATTGGGATGCACGTCCTTCCTCAAGGAGCAATGAATATCCCCTTTTTATACCTCGCCAAAATTATTGCTCTACTGACGGAGAAAACTCATGGTCTGAGAGAAGCTCAAGCAATTTTGGAGTTGCTTCGGTGGAATCTGAGAGGAGGCATCGCCTAGATTCATCTGGGAGTACTAGCTTTAATTATTCTTTGGCTTCTTCGCATTCTGTTCAAACACACAAAGATTTGCAGAAAGGAATTTCACTTCTAAAGAAAAGCGTAGTCTGCATCACAGCTTACTGTTACAACTCCCTGTGTTTAGATGTCCCTTCTGAGGCATCTACATTTGAGGCTTTTGCAAAGTTATTGGCAACACTCGCATCATCCAAGGAAGTTCGATCTGTTTTTTCCTTGAAAATGGCTCGCTCTAGGTATTGTTATATTTATTTCATGATACTTTATACACATTGTAAAAATGTTAGTAATTTTTTACAAATTAACCTTATTCTGACAGAATTCTGA

Predicted protein sequences of Glyma14g33820

Limit To All Plant Sequences

>Glyma14g33820.1   sequence type=predicted peptide   gene model=Glyma14g33820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARKTSNCAICENSNQASICSICVNYRLNEYNTSLKLLKDRRDSLYLKLSEVLVRKGKGDDQANWRVLQHEKLARLKEKLRQSKEQVTQGRAKIETMSADLKLKYGLLESALSTLEKNRVEQLEKFYPNLICTQSLGHVAITSELLHKESVVIKQICKLFPQRRVVIEGERRDGCSGQYDQICNARLPRALDPHSVPSEELSTSLGYMVQLLNLVIHNLAAPALHNSGFAGSCSRIWQRDSYWDARPSSRSNEYPLFIPRQNYCSTDGENSWSERSSSNFGVASVESERRHRLDSSGSTSFNYSLASSHSVQTHKDLQKGISLLKKSVVCITAYCYNSLCLDVPSEASTFEAFAKLLATLASSKEVRSVFSLKMARSRTCKQVQQLNKSVWNMNSAISSTTLLESAHSVPTTRIENYLPSSTGSFLYAADLSDGKNECLIEGWDIVEHPTFPPPPSQSEDVEHWTRAMFIDAKGK*

>Glyma14g33820.2   sequence type=predicted peptide   gene model=Glyma14g33820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARKTSNCAICENSNQASICSICVNYRLNEYNTSLKLLKDRRDSLYLKLSEVLVRKGKGDDQANWRVLQHEKLARLKEKLRQSKEQVTQGRAKIETMSADLKLKYGLLESALSTLEKNRVEQLEKFYPNLICTQSLGHVAITSELLHKESVVIKQICKLFPQRRVVIEGERRDGCSGQYDQICNARLPRALDPHSVPSEELSTSLGYMVQLLNLVIHNLAAPALHNSGFAGSCSRIWQRDSYWDARPSSRSNEYPLFIPRQNYCSTDGENSWSERSSSNFGVASVESERRHRLDSSGSTSFNYSLASSHSVQTHKDLQKGISLLKKSVVCITAYCYNSLCLDVPSEASTFEAFAKLLATLASSKEVRSVFSLKMARSRYCYIYFMILYTHCKNVSNFLQINLILTEF*

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