SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G36380 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:13700917-13701346 FORWARD LENGTH=84 | SoyBase | E_val: 7.00E-19 | ISS |
| GO:0006661 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| UniRef100_UPI000233BB0B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BB0B related cluster n=1 Tax=unknown RepID=UPI000233BB0B | SoyBase | E_val: 1.00E-47 | ISS |
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Glyma14g33743 not represented in the dataset |
Glyma14g33743 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g02390 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g166600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g33743.2 sequence type=transcript gene model=Glyma14g33743 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGCTCAATGTAATTTAAAAAGTGGTAGATTTTAAATAAACATTTATTGTTGTCTGGACCAACTGGGGTCAGTTCAAGGCCCAGACGAAGCATACAACAGCCGAAGTCGCTCGCCGATGTAAAGTTGATGTCTTGTTGGAGATGGTGTCGTTGTCGATGTCTATTTGGGAATACACAGTGCTCCTCCTTCTACGGCCCCTCCTCGCCGTAACGTTCGTTCTCTTCTTAATATCCCTCGGTTGGTTTGTGGCGTGGAAACTGGTGCTGGTGCACGTGCCTCTGGTGCAAGAGGTTTTCGGCCTCAAGAAGAAAGCTGTTCGAGTGAAGCCCCCAACTGATGAGAGCCTTAAATTGTGAAATGTGAAGTGACATGTTGGAAATGGTTAACATGGAATCTTGGATAGTAGAACAGGCACTGACTCATTGAAATAAATGAAGAAATCCTAAGTAACAGGCAACACACTTCAAAAAATGGAGATTGGGATATTATACACCTTGTACATAACATTAGAAAACTAAG
>Glyma14g33743.1 sequence type=CDS gene model=Glyma14g33743 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGTCGTTGTCGATGTCTATTTGGGAATACACAGTGCTCCTCCTTCTACGGCCCCTCCTCGCCGTAACGTTCGTTCTCTTCTTAATATCCCTCGGTTGGTTTGTGGCGTGGAAACTGGTGCTGGTGCACGTGCCTCTGGTGCAAGAGGTTTTCGGCCTCAAGAAGAAAGCTGTTCGAGTGAAGCCCCCAACTGGTCGCTTCTCCAAAATTTACGGCACCCTTCATGCCAAAAACTCACCCTCCACTTCATAA >Glyma14g33743.2 sequence type=CDS gene model=Glyma14g33743 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGTCGTTGTCGATGTCTATTTGGGAATACACAGTGCTCCTCCTTCTACGGCCCCTCCTCGCCGTAACGTTCGTTCTCTTCTTAATATCCCTCGGTTGGTTTGTGGCGTGGAAACTGGTGCTGGTGCACGTGCCTCTGGTGCAAGAGGTTTTCGGCCTCAAGAAGAAAGCTGTTCGAGTGAAGCCCCCAACTGATGAGAGCCTTAAATTGTGA
>Glyma14g33743.1 sequence type=predicted peptide gene model=Glyma14g33743 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSLSMSIWEYTVLLLLRPLLAVTFVLFLISLGWFVAWKLVLVHVPLVQEVFGLKKKAVRVKPPTGRFSKIYGTLHAKNSPSTS* >Glyma14g33743.2 sequence type=predicted peptide gene model=Glyma14g33743 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSLSMSIWEYTVLLLLRPLLAVTFVLFLISLGWFVAWKLVLVHVPLVQEVFGLKKKAVRVKPPTDESLKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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