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Report for Sequence Feature Glyma14g33680

Feature Type:gene_model
Chromosome:Gm14
Start:41762894
stop:41763517
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g33680
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G36940AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:14004158-14004706 FORWARD LENGTH=182 SoyBaseE_val: 7.00E-32ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1MAN1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MAN1_SOYBN SoyBaseE_val: 1.00E-135ISS

Expression Patterns of Glyma14g33680
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g33680 not represented in the dataset
Glyma14g33680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g33680
ParalogEvidenceComments
Glyma13g02430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g33680 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g166200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g33680
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g33680
>Glyma14g33680.1   sequence type=CDS   gene model=Glyma14g33680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAGTGAAAATCATCACCATTCCCATCATTACTTTTACCATCAGAACCTGCATATCCATCACAGAAGCACATTCCTGCCAATGCTATGTTCAAGGCCATCCATCAAAGATGTGAGTCTTCCACAGTGGAGAGAGCAACTAGGATCCTTCTCCAATGACCCTTTGTCCCCAAGAATTGGTTGCATGGGCCAGGTGAAGAGGCACAATAAAATAGTTGGACTCCTCACCACCAAAAGTAACACCACCAGCATCTCCATTTCCCCTAGTGTTAAGTATTCCAAGCTCAAAAAACTCTTCTCTGGCAAAAACTTAGGCACCAGCATCATCAATGCTACTGCTCCTACCGCCACCAGCTGTGGAAGTAGGCCGCGAGGGACGGTGAATAGCGTAAATGTGCCCAGGAACCACAGGCACAGGAGTAGTAAGAATGAGAATGTTGTTCCCATAAGCGTTGAAAATATGGATCCTCCTCTGCCTGTGATCAAGAGAGTGCAGAAGCCTGAGGAAGATAGACAACTGGATAATCTTTGGAAAAGAAGGTCAGGTGGGGCTGCATTGAAAAGTTTGCAGCTTCAACAGATTCACCATTCAAGACATCATCCTCAGCTTACAAGTGTTTGA
Predicted protein sequences of Glyma14g33680
>Glyma14g33680.1   sequence type=predicted peptide   gene model=Glyma14g33680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSENHHHSHHYFYHQNLHIHHRSTFLPMLCSRPSIKDVSLPQWREQLGSFSNDPLSPRIGCMGQVKRHNKIVGLLTTKSNTTSISISPSVKYSKLKKLFSGKNLGTSIINATAPTATSCGSRPRGTVNSVNVPRNHRHRSSKNENVVPISVENMDPPLPVIKRVQKPEEDRQLDNLWKRRSGGAALKSLQLQQIHHSRHHPQLTSV*






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