Glyma14g33400 - SoyBase

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Report for Sequence Feature Glyma14g33400

Feature Type:	gene_model
Chromosome:	Gm14
Start:	41242981
stop:	41250082
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g33400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77720	AT	Annotation by Michelle Graham. TAIR10: putative protein kinase 1 \| chr1:29210730-29213877 FORWARD LENGTH=777	SoyBase	E_val: 0	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell-cell signaling	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0198	KOG	MEKK and related serine/threonine protein kinases	JGI		ISS
KOG0596	KOG	Dual specificity; serine/threonine and tyrosine kinase	JGI		ISS
PTHR22974	Panther	MIXED LINEAGE PROTEIN KINASE	JGI		ISS
PTHR22974:SF6	Panther	PROTEIN KINASE FAMILY PROTEIN	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7K8X9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase n=1 Tax=Medicago truncatula RepID=G7K8X9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MAL7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAL7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g33400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g33400 not represented in the dataset	Glyma14g33400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g33400

Paralog	Evidence	Comments
Glyma13g02620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g33400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g164400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g33400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g33400

Limit To All Plant Sequences

>Glyma14g33400.2   sequence type=transcript   gene model=Glyma14g33400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTACAATTTTTATGCTCAAAGTTGCATTTTTACTGTAGTTACTAACAATTTATTCTCTTTCACGTGGCTAAACCTCACTCTCAAACTCTCCTTAAGATAAAGACCTTCTTGTTTAGGTTTATGTATAACAATAACAACCGTAGCAAATAGCCTTGTCCCAAGTATCAAAGCTGATGAGGCTCTCCTAGACTAGCTTCTTTACCGGACATATGTGAGGACCTTTGCTCATTTGACACTACATATGGGTGCTGATGCATCGGCTTTAGCTCAAGCGGGTTACTTTCGGATGAAGCATCGATTGGATTCAATCAACATGTGAAGCACCAAAATACACAGCAGGCAGAATCCGAAACTAGTTTGGTATATGAGGGAGGCAAGAGTTCTCCGCTGCCAAAGAGAACAATAGTTACTCAAGATCATCTGCAGCAATTCAAAAACTTTTTGAGGCAACCAGCTACACAATCTTCCGTAGTGGGATTGCCATGTCCTACAACGACATCAGTCCATTCAACTTCAGCTCCAATGCTGAATTCTATAACTCATTGTTCTAATTCCTGTATAGATAGTGGTTCACATGTGGCTGCAGAACCTTATGGGAACCTGAATGTTAATCCTCATCCTATAACTCAAGGGGATGTTAAATCACCAAATAATTCCCTGAAAGACACCAATAGAATATCAATTGATCAGGTGGCAAGTGCAGTCCAAGATTGTAATTCACTAATTGATGCAGAGTTGACGCTTAAGCAAAGTGACCCATCTAAGGAGCAGCAAGGATGTATGTTAAAGGATACAAGTATTTCAAAATGTACCTCTTGTCGTGATGACATGTTAAGTAAAGGGGAAGTGTCTGCAGCTGTTACCAACATACAGCCTCAGGTTCCTACTTCATCTTCAGAAGTGAAATTGGAGTCTTCTAAGTTGGAAAAGCAAGAGAAAAATACAAGTTCTAAAGCATCATCAGGCCTTCGAAAGAGGGCCTATGACCCTGAATTGTTTTTCAAAGTCAATGGCAAGCTTTATCAAAGGCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAGGTGATTTCATCAGACTGTACAATCTATGCACTTAAAAGGATAAAATTAAAGGGTCGTGATTATGCCACTGCATATGGCTTTTGTCAAGAGATCGAGTATCTAAATAGGCTGAAAGGAAAGAATAATATTATCCAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGTTTGAGGGAGTCATAAATGGCTCCTTCAGTAATAAGGATGGTAGAGTCAAGGATGATGGATATATATACATGGTACTTGAATACGGGGAAATTGATTTGGCTCATATGTTGTCTCAAAAGTGGAAGGAACTGGATGGAAGCAACCAGACCATAGATGAGAACTGGCTTCGGTTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACAATTCATGAAGAACGTATTGTGCATTCTGACTTGAAGCCAGCTAACTTCCTCCTTGTCAAAGGTTCCTTAAAACTGATTGATTTTGGAATAGCCAAAGCAATAATGAGTGATACAACAAACATCCAACGTGATTCACAGGTTGGTACTCTAAGTTACATGTCACCAGAAGCATTTATGTGCAATGAGAGTGATGCAAGTGGAAACATCATAAAATGTGGTCGGCCATCAGATATCTGGTCCCTTGGCTGCATTCTTTATCAAATGGTATATGGGAGAACACCATTTGCAGATTACAAGACATTTTGGGCAAAATTCAAAGTTATAACTGATCCAAATCATGAAATTATGTACGCACCAGTTTCAAATCCATGGCTTCTGGATCTTATGAGAAGGTGTCTAGCATGGGATCGCAATGAAAGGTGGAGAATTCCTCAGCTGCTACAGCATCCTTTTCTAGTTCCCCCAGTCCCATGTCATTCATCTTTTTACCAAGAACAAACCTTTAAATTGCTGCAACTTATATCTGAAGCTTGCATAAATGACCCAGAATCATCACAGCTCTGTTGTCAGCTCCAACAGGTGCTTGGTAATCCCATCAAGTCAACTAGTATTCATTCATTAAATTCACTAGACCAACAGCATAAATTGCTGTCCCGAATATCAGAACTTTGTATTCTACTACAGGAACGATTGACAAAGACAGATAAACTATAGGTGCTTGTTTTGTTTAAGCTTATATTGAGGAATTTATAAATTATTTTGTCAAAAGATGTCTTAAGAGGTGAAGTAAGCCAGTGGTTTCTTATTGTTCATTCCAATTTCCAGTGGTTTTTATCCAATCATTTTTCTCTCCAATGTACTAGTAACTAGAAAGGAAGGTATAACCTTGTTGTCATGACATGTTTCATGTTTATGGTGCCTCAATTGTGTTCCTCATTTTTCAGGTGTTATAATGTGTGGAAAAGTGTAAATTTAAAAGGTGCTATATGAAGCAGTATATTGGAAAATTTTCGAATAGATGGTTTGTCAAATGAAGTAATGAAACATGCAAGG

Coding sequences of Glyma14g33400

Limit To All Plant Sequences

>Glyma14g33400.1   sequence type=CDS   gene model=Glyma14g33400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATAACCCTAACCCCTCACTCCCTCGCGTCTCTTCCTCTTCCTCCCAGGAGTTTCTCAAACAAGTCCAAGCTGCCCTCAAGCGCCATGGCCCTCTCGGTGCGACGCAATCCCATAACGTGAGGCCGAAGCGCGCCACGGTGGCTCTGCGAAATGCCGCGAACAAGTTTGAGGAGGAAACGCCGTCAATTTCGGACACCGGCGAAGGCTGTAAAAACGAGTCCTCTTTGCAGGTGAAATCTCTGAGTGTTGGTGCACACAAGAAGGTGCAGTTTTTAACTGAGATCAACAATGCCACTGCACAGCCGCAGGATGAAGCATCGATTGGATTCAATCAACATGTGAAGCACCAAAATACACAGCAGGCAGAATCCGAAACTAGTTTGGTATATGAGGGAGGCAAGAGTTCTCCGCTGCCAAAGAGAACAATAGTTACTCAAGATCATCTGCAGCAATTCAAAAACTTTTTGAGGCAACCAGCTACACAATCTTCCGTAGTGGGATTGCCATGTCCTACAACGACATCAGTCCATTCAACTTCAGCTCCAATGCTGAATTCTATAACTCATTGTTCTAATTCCTGTATAGATAGTGGTTCACATGTGGCTGCAGAACCTTATGGGAACCTGAATGTTAATCCTCATCCTATAACTCAAGGGGATGTTAAATCACCAAATAATTCCCTGAAAGACACCAATAGAATATCAATTGATCAGGTGGCAAGTGCAGTCCAAGATTGTAATTCACTAATTGATGCAGAGTTGACGCTTAAGCAAAGTGACCCATCTAAGGAGCAGCAAGGATGTATGTTAAAGGATACAAGTATTTCAAAATGTACCTCTTGTCGTGATGACATGTTAAGTAAAGGGGAAGTGTCTGCAGCTGTTACCAACATACAGCCTCAGGTTCCTACTTCATCTTCAGAAGTGAAATTGGAGTCTTCTAAGTTGGAAAAGCAAGAGAAAAATACAAGTTCTAAAGCATCATCAGGCCTTCGAAAGAGGGCCTATGACCCTGAATTGTTTTTCAAAGTCAATGGCAAGCTTTATCAAAGGCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAGGTGATTTCATCAGACTGTACAATCTATGCACTTAAAAGGATAAAATTAAAGGGTCGTGATTATGCCACTGCATATGGCTTTTGTCAAGAGATCGAGTATCTAAATAGGCTGAAAGGAAAGAATAATATTATCCAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGTTTGAGGGAGTCATAAATGGCTCCTTCAGTAATAAGGATGGTAGAGTCAAGGATGATGGATATATATACATGGTACTTGAATACGGGGAAATTGATTTGGCTCATATGTTGTCTCAAAAGTGGAAGGAACTGGATGGAAGCAACCAGACCATAGATGAGAACTGGCTTCGGTTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACAATTCATGAAGAACGTATTGTGCATTCTGACTTGAAGCCAGCTAACTTCCTCCTTGTCAAAGGTTCCTTAAAACTGATTGATTTTGGAATAGCCAAAGCAATAATGAGTGATACAACAAACATCCAACGTGATTCACAGGTTGGTACTCTAAGTTACATGTCACCAGAAGCATTTATGTGCAATGAGAGTGATGCAAGTGGAAACATCATAAAATGTGGTCGGCCATCAGATATCTGGTCCCTTGGCTGCATTCTTTATCAAATGGTATATGGGAGAACACCATTTGCAGATTACAAGACATTTTGGGCAAAATTCAAAGTTATAACTGATCCAAATCATGAAATTATGTACGCACCAGTTTCAAATCCATGGCTTCTGGATCTTATGAGAAGGTGTCTAGCATGGGATCGCAATGAAAGGTGGAGAATTCCTCAGCTGCTACAGCATCCTTTTCTAGTTCCCCCAGTCCCATGTCATTCATCTTTTTACCAAGAACAAACCTTTAAATTGCTGCAACTTATATCTGAAGCTTGCATAAATGACCCAGAATCATCACAGCTCTGTTGTCAGCTCCAACAGGTGCTTGGTAATCCCATCAAGTCAACTAGTATTCATTCATTAAATTCACTAGACCAACAGCATAAATTGCTGTCCCGAATATCAGAACTTTGTATTCTACTACAGGAACGATTGACAAAGACAGATAAACTATAG

>Glyma14g33400.2   sequence type=CDS   gene model=Glyma14g33400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAATTCTATAACTCATTGTTCTAATTCCTGTATAGATAGTGGTTCACATGTGGCTGCAGAACCTTATGGGAACCTGAATGTTAATCCTCATCCTATAACTCAAGGGGATGTTAAATCACCAAATAATTCCCTGAAAGACACCAATAGAATATCAATTGATCAGGTGGCAAGTGCAGTCCAAGATTGTAATTCACTAATTGATGCAGAGTTGACGCTTAAGCAAAGTGACCCATCTAAGGAGCAGCAAGGATGTATGTTAAAGGATACAAGTATTTCAAAATGTACCTCTTGTCGTGATGACATGTTAAGTAAAGGGGAAGTGTCTGCAGCTGTTACCAACATACAGCCTCAGGTTCCTACTTCATCTTCAGAAGTGAAATTGGAGTCTTCTAAGTTGGAAAAGCAAGAGAAAAATACAAGTTCTAAAGCATCATCAGGCCTTCGAAAGAGGGCCTATGACCCTGAATTGTTTTTCAAAGTCAATGGCAAGCTTTATCAAAGGCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAGGTGATTTCATCAGACTGTACAATCTATGCACTTAAAAGGATAAAATTAAAGGGTCGTGATTATGCCACTGCATATGGCTTTTGTCAAGAGATCGAGTATCTAAATAGGCTGAAAGGAAAGAATAATATTATCCAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGTTTGAGGGAGTCATAAATGGCTCCTTCAGTAATAAGGATGGTAGAGTCAAGGATGATGGATATATATACATGGTACTTGAATACGGGGAAATTGATTTGGCTCATATGTTGTCTCAAAAGTGGAAGGAACTGGATGGAAGCAACCAGACCATAGATGAGAACTGGCTTCGGTTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACAATTCATGAAGAACGTATTGTGCATTCTGACTTGAAGCCAGCTAACTTCCTCCTTGTCAAAGGTTCCTTAAAACTGATTGATTTTGGAATAGCCAAAGCAATAATGAGTGATACAACAAACATCCAACGTGATTCACAGGTTGGTACTCTAAGTTACATGTCACCAGAAGCATTTATGTGCAATGAGAGTGATGCAAGTGGAAACATCATAAAATGTGGTCGGCCATCAGATATCTGGTCCCTTGGCTGCATTCTTTATCAAATGGTATATGGGAGAACACCATTTGCAGATTACAAGACATTTTGGGCAAAATTCAAAGTTATAACTGATCCAAATCATGAAATTATGTACGCACCAGTTTCAAATCCATGGCTTCTGGATCTTATGAGAAGGTGTCTAGCATGGGATCGCAATGAAAGGTGGAGAATTCCTCAGCTGCTACAGCATCCTTTTCTAGTTCCCCCAGTCCCATGTCATTCATCTTTTTACCAAGAACAAACCTTTAAATTGCTGCAACTTATATCTGAAGCTTGCATAAATGACCCAGAATCATCACAGCTCTGTTGTCAGCTCCAACAGGTGCTTGGTAATCCCATCAAGTCAACTAGTATTCATTCATTAAATTCACTAGACCAACAGCATAAATTGCTGTCCCGAATATCAGAACTTTGTATTCTACTACAGGAACGATTGACAAAGACAGATAAACTATAG

Predicted protein sequences of Glyma14g33400

Limit To All Plant Sequences

>Glyma14g33400.1   sequence type=predicted peptide   gene model=Glyma14g33400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDNPNPSLPRVSSSSSQEFLKQVQAALKRHGPLGATQSHNVRPKRATVALRNAANKFEEETPSISDTGEGCKNESSLQVKSLSVGAHKKVQFLTEINNATAQPQDEASIGFNQHVKHQNTQQAESETSLVYEGGKSSPLPKRTIVTQDHLQQFKNFLRQPATQSSVVGLPCPTTTSVHSTSAPMLNSITHCSNSCIDSGSHVAAEPYGNLNVNPHPITQGDVKSPNNSLKDTNRISIDQVASAVQDCNSLIDAELTLKQSDPSKEQQGCMLKDTSISKCTSCRDDMLSKGEVSAAVTNIQPQVPTSSSEVKLESSKLEKQEKNTSSKASSGLRKRAYDPELFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKRIKLKGRDYATAYGFCQEIEYLNRLKGKNNIIQLIDYEVTDKALFEGVINGSFSNKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGSNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDASGNIIKCGRPSDIWSLGCILYQMVYGRTPFADYKTFWAKFKVITDPNHEIMYAPVSNPWLLDLMRRCLAWDRNERWRIPQLLQHPFLVPPVPCHSSFYQEQTFKLLQLISEACINDPESSQLCCQLQQVLGNPIKSTSIHSLNSLDQQHKLLSRISELCILLQERLTKTDKL*

>Glyma14g33400.2   sequence type=predicted peptide   gene model=Glyma14g33400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNSITHCSNSCIDSGSHVAAEPYGNLNVNPHPITQGDVKSPNNSLKDTNRISIDQVASAVQDCNSLIDAELTLKQSDPSKEQQGCMLKDTSISKCTSCRDDMLSKGEVSAAVTNIQPQVPTSSSEVKLESSKLEKQEKNTSSKASSGLRKRAYDPELFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKRIKLKGRDYATAYGFCQEIEYLNRLKGKNNIIQLIDYEVTDKALFEGVINGSFSNKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGSNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDASGNIIKCGRPSDIWSLGCILYQMVYGRTPFADYKTFWAKFKVITDPNHEIMYAPVSNPWLLDLMRRCLAWDRNERWRIPQLLQHPFLVPPVPCHSSFYQEQTFKLLQLISEACINDPESSQLCCQLQQVLGNPIKSTSIHSLNSLDQQHKLLSRISELCILLQERLTKTDKL*

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