Glyma14g33161 - SoyBase

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Report for Sequence Feature Glyma14g33161

Feature Type:	gene_model
Chromosome:	Gm14
Start:	40620309
stop:	40624931
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g33161

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_Q7XV49	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0086B14.6 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XV49_ORYSJ	SoyBase	E_val: 8.00E-45	ISS
UniRef100_UPI000233B991	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B991 related cluster n=1 Tax=unknown RepID=UPI000233B991	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g33161

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g33161 not represented in the dataset	Glyma14g33161 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g33161

Paralog	Evidence	Comments
Glyma13g02771	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g33161 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g162900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g33161

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g33161

Limit To All Plant Sequences

>Glyma14g33161.2   sequence type=transcript   gene model=Glyma14g33161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGTTGCTCTTGGCCTAGGTTACAAGAATACGAACCATTTGTTGGCGCCAAAAGAAGAGAAGGAGAAGAAGATGGGTTCAGCATTTGGATGGTACGGTCCTCTCATAGACCTCTCCACAACCTCTTCTCGCATCGGCGATTTCGTTCAGCTTCTCGTCTTCGTTCACCGTTCCTTCCCCGTTCAGGTTTCTCCCTTAATTATTAGACTTCTTCTTCTGTTAACTTAATTGCGTCCCTTTTTCTTTCTTATTCCCCAGTGCAAATCGTGGAAACGTGGACGCGACCTAACCCGAACCGACATTGAAGTCGGCGACGATACGATGCCGTTTTTTGTGGTTTCTCTTTGGCAGAAGCAAATGGGGTCCATGGTATCAGCCGGAGATGTCGTCTTGTTACAGAATCTCAAGATTGCGAAGTATGGAAACGCCGTTGAGGCCAGAACCGTTCAGTGGTCTTCGCTGCTTTGCTTGGTTCACCCTTACCAATCACTTCTCTCAAAGGCTGTTGAAGAGTTGGTAACAGGTTGCCGTGTGGGGACAACAACAAAGGACAAGCTTAGGAGGGTCATAAAATGGGTGCAGCAGTCTCGGTCAACCATTTGCAACATTAAGTTGCAGTCCAATCAAACACAGAAAATAGAGCATCTGCCTAGAAACTGGACGGTGCTTGAAGAGGAAAAGCCTAGGGACTGCTTTTCACTTATGGAAGTCTCTCAGCTAACAACATCCTGCAAGGCTATAGTATGTGCATCGATTGGTGAAATTGTTCCACTACATACCTCCAGGACTCTTGGTGATACCAAGAAAGAGAAGGTTTTCATTAGCAGGAGAGTTTGCAGAACTGAGGATAACGAATTAGTGGATGATCTCTTATGCACTGGCTGCCAGCTCTGTGGTTCACCCTTAGATTCAAAATTTGAGCAAAATGCTGTTCCACTGATCTGTTGGAAAACTTCAAGCCGCCTTCACTCTATATGCTCGATATATCGGCCCTTCTTGCTATATGTCTGGGACGAATCAGATTACATGCCAATTCTTGTTAAGAACAGGGCCGCAGAAATCTTGTTTGGGAACATCAAGGCTGGAAAAGTATATTCAGCTTATAAAGAGCAAATGAATAACCAAAATCTTGGTCCAAGAAACGATAAAGATGCCATTGGAAGACTTGCTATTGACCCGAGACTTTCTGGGGAAGGACTTCCGAGTACCAGTACATTAGAGGTGGGTAAGAGCTTGCAATTGCAGGAAAAACATCTTCCTGATAAGTTAAACTATTACCGTGTATGGTTAATTCTTCTGAAAATGTTGCTGAAACAAGGAAAGAACGGCCCTCTGAAATTAGAGATCATTGTTGATCCCAGCTTAGATATTGAAAATGGAAAATTTGAACTGGTTTCTGCAACAATGCCTTGCTTTGGAACCAAATGATTTCACATGTCATGGACTTTGCATATCTGCTTGCGCAACTTCCTAACTGCAAATTC

Coding sequences of Glyma14g33161

Limit To All Plant Sequences

>Glyma14g33161.1   sequence type=CDS   gene model=Glyma14g33161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTGCTCTTGGCCTAGGTTACAAGAATACGAACCATTTGTTGGCGCCAAAAGAAGAGAAGGAGAAGAAGATGGGTTCAGCATTTGGATGTGCAAATCGTGGAAACGTGGACGCGACCTAACCCGAACCGACATTGAAGTCGGCGACGATACGATGCCGTTTTTTGTGGTTTCTCTTTGGCAGAAGCAAATGGGGTCCATGGTATCAGCCGGAGATGTCGTCTTGTTACAGAATCTCAAGATTGCGAAGTATGGAAACGCCGTTGAGGCCAGAACCGTTCAGTGGTCTTCGCTGCTTTGCTTGGTTCACCCTTACCAATCACTTCTCTCAAAGGCTGTTGAAGAGTTGGTAACAGGTTGCCGTGTGGGGACAACAACAAAGGACAAGCTTAGGAGGGTCATAAAATGGGTGCAGCAGTCTCGGTCAACCATTTGCAACATTAAGTTGCAGTCCAATCAAACACAGAAAATAGAGCATCTGCCTAGAAACTGGACGGTGCTTGAAGAGGAAAAGCCTAGGGACTGCTTTTCACTTATGGAAGTCTCTCAGCTAACAACATCCTGCAAGGCTATAGTATGTGCATCGATTGGTGAAATTGTTCCACTACATACCTCCAGGACTCTTGGTGATACCAAGAAAGAGAAGGTTTTCATTAGCAGGAGAGTTTGCAGAACTGAGGATAACGAATTAGTGGATGATCTCTTATGCACTGGCTGCCAGCTCTGTGGTTCACCCTTAGATTCAAAATTTGAGCAAAATGCTGTTCCACTGATCTGTTGGAAAACTTCAAGCCGCCTTCACTCTATATGCTCGATATATCGGCCCTTCTTGCTATATGTCTGGGACGAATCAGATTACATGCCAATTCTTGTTAAGAACAGGGCCGCAGAAATCTTGTTTGGGAACATCAAGGCTGGAAAAGTATATTCAGCTTATAAAGAGCAAATGAATAACCAAAATCTTGGTCCAAGAAACGATAAAGATGCCATTGGAAGACTTGCTATTGACCCGAGACTTTCTGGGGAAGGACTTCCGAGTACCAGTACATTAGAGGTGGGTAAGAGCTTGCAATTGCAGGAAAAACATCTTCCTGATAAGTTAAACTATTACCGTGTATGGTTAATTCTTCTGAAAATGTTGCTGAAACAAGGAAAGAACGGCCCTCTGAAATTAGAGATCATTGTTGATCCCAGCTTAGATATTGAAAATGGAAAATTTGAACTGGTTTCTGCAACAATGCCTTGCTTTGGAACCAAATGA

>Glyma14g33161.2   sequence type=CDS   gene model=Glyma14g33161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTTTTTTGTGGTTTCTCTTTGGCAGAAGCAAATGGGGTCCATGGTATCAGCCGGAGATGTCGTCTTGTTACAGAATCTCAAGATTGCGAAGTATGGAAACGCCGTTGAGGCCAGAACCGTTCAGTGGTCTTCGCTGCTTTGCTTGGTTCACCCTTACCAATCACTTCTCTCAAAGGCTGTTGAAGAGTTGGTAACAGGTTGCCGTGTGGGGACAACAACAAAGGACAAGCTTAGGAGGGTCATAAAATGGGTGCAGCAGTCTCGGTCAACCATTTGCAACATTAAGTTGCAGTCCAATCAAACACAGAAAATAGAGCATCTGCCTAGAAACTGGACGGTGCTTGAAGAGGAAAAGCCTAGGGACTGCTTTTCACTTATGGAAGTCTCTCAGCTAACAACATCCTGCAAGGCTATAGTATGTGCATCGATTGGTGAAATTGTTCCACTACATACCTCCAGGACTCTTGGTGATACCAAGAAAGAGAAGGTTTTCATTAGCAGGAGAGTTTGCAGAACTGAGGATAACGAATTAGTGGATGATCTCTTATGCACTGGCTGCCAGCTCTGTGGTTCACCCTTAGATTCAAAATTTGAGCAAAATGCTGTTCCACTGATCTGTTGGAAAACTTCAAGCCGCCTTCACTCTATATGCTCGATATATCGGCCCTTCTTGCTATATGTCTGGGACGAATCAGATTACATGCCAATTCTTGTTAAGAACAGGGCCGCAGAAATCTTGTTTGGGAACATCAAGGCTGGAAAAGTATATTCAGCTTATAAAGAGCAAATGAATAACCAAAATCTTGGTCCAAGAAACGATAAAGATGCCATTGGAAGACTTGCTATTGACCCGAGACTTTCTGGGGAAGGACTTCCGAGTACCAGTACATTAGAGGTGGGTAAGAGCTTGCAATTGCAGGAAAAACATCTTCCTGATAAGTTAAACTATTACCGTGTATGGTTAATTCTTCTGAAAATGTTGCTGAAACAAGGAAAGAACGGCCCTCTGAAATTAGAGATCATTGTTGATCCCAGCTTAGATATTGAAAATGGAAAATTTGAACTGGTTTCTGCAACAATGCCTTGCTTTGGAACCAAATGA

Predicted protein sequences of Glyma14g33161

Limit To All Plant Sequences

>Glyma14g33161.1   sequence type=predicted peptide   gene model=Glyma14g33161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCSWPRLQEYEPFVGAKRREGEEDGFSIWMCKSWKRGRDLTRTDIEVGDDTMPFFVVSLWQKQMGSMVSAGDVVLLQNLKIAKYGNAVEARTVQWSSLLCLVHPYQSLLSKAVEELVTGCRVGTTTKDKLRRVIKWVQQSRSTICNIKLQSNQTQKIEHLPRNWTVLEEEKPRDCFSLMEVSQLTTSCKAIVCASIGEIVPLHTSRTLGDTKKEKVFISRRVCRTEDNELVDDLLCTGCQLCGSPLDSKFEQNAVPLICWKTSSRLHSICSIYRPFLLYVWDESDYMPILVKNRAAEILFGNIKAGKVYSAYKEQMNNQNLGPRNDKDAIGRLAIDPRLSGEGLPSTSTLEVGKSLQLQEKHLPDKLNYYRVWLILLKMLLKQGKNGPLKLEIIVDPSLDIENGKFELVSATMPCFGTK*

>Glyma14g33161.2   sequence type=predicted peptide   gene model=Glyma14g33161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPFFVVSLWQKQMGSMVSAGDVVLLQNLKIAKYGNAVEARTVQWSSLLCLVHPYQSLLSKAVEELVTGCRVGTTTKDKLRRVIKWVQQSRSTICNIKLQSNQTQKIEHLPRNWTVLEEEKPRDCFSLMEVSQLTTSCKAIVCASIGEIVPLHTSRTLGDTKKEKVFISRRVCRTEDNELVDDLLCTGCQLCGSPLDSKFEQNAVPLICWKTSSRLHSICSIYRPFLLYVWDESDYMPILVKNRAAEILFGNIKAGKVYSAYKEQMNNQNLGPRNDKDAIGRLAIDPRLSGEGLPSTSTLEVGKSLQLQEKHLPDKLNYYRVWLILLKMLLKQGKNGPLKLEIIVDPSLDIENGKFELVSATMPCFGTK*

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