Glyma14g32430 - SoyBase

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Report for Sequence Feature Glyma14g32430

Feature Type:	gene_model
Chromosome:	Gm14
Start:	39579871
stop:	39582951
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g32430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G29380	AT	Annotation by Michelle Graham. TAIR10: highly ABA-induced PP2C gene 3 \| chr2:12608855-12610124 FORWARD LENGTH=362	SoyBase	E_val: 5.00E-84	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein serine/threonine phosphatase complex	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF115	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_I1MAJ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAJ9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9ZPL9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nodule-enhanced protein phosphatase type 2C n=1 Tax=Lotus japonicus RepID=Q9ZPL9_LOTJA	SoyBase	E_val: 4.00E-173	ISS

Proteins Associated with Glyma14g32430

Locus	Gene Symbol	Protein Name
	PP2C	protein phosphatase 2C

Expression Patterns of Glyma14g32430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g32430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g162100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g32430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g32430

Limit To All Plant Sequences

>Glyma14g32430.2   sequence type=transcript   gene model=Glyma14g32430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTACACCATAACACCCTCCCTTTCAAATCAACGGTCCACATTCCACGCCTCTCAGATCTCGCAATCAAACACTTTAAATTCCCTCCTTCCTCACAACATGCCGTTTCTCTTTTACAGCCGTTTTTCTTATTTTATTTATTTACTTCGGCTTGATTTTAGTTTCGTGTTGTGATGTTTTCTGTGGTTCTGTTGTGTTATGTTCAGTTCGTTGCATGCAAAAACGATTATGAAGACGCCAAAACGCCACTCGCCGCCGCCAAATTCTTCCCTGCGAGTGGAGTCTGATTCCGGCGAAATCGTCACGAGGTTCAAGAACGGTCGCCGGAGAAGAATTAAAATCAAGCGAATGAAATACACTTGCCAGACGAAGATCCGCGTCAGGAATGACGCCGGCGCCGGCGGCGTGTCTCAACTTCTGGCGGTGGATTCTGAAGGAGAGAAGAGAGAGATTCACGAGAACGTGGAGATATCGCTGTCGCTGGCTTCGTCGTCGTCGGAAGAGGAAGAGCGATTGTCGTCGAAGCAAAACGACGGCGTTTTGTCGTACGGGTCGGCATCGGTGATAGGGAGCAGGAAGGAGATGGAGGACGCGGTGAGTGAGGAGATAGGGTTTGCTGCGAAGTGCGACTTCTTCGCGGTGTACGACGGCCACGGCGGAGCTCAGGTGGCGGAGGCGTGCAGGGAGAGGCTGTACAGGCTGGTGGCGGAGGAGATGGAGAGGAGTGCGAGTCACGTGGAATGGGACTGGCGGGGAGTGATGGAAGGGTGTTTTCGGAAAATGGACTGCGAGGTTGCCGGCAATGCGGCTGTCAGGACGGTGGGTTCCACGGCTGTTGTCGCCGTCGTCGCGGCGGCGGAGGTTGTCGTTGCTAATTGCGGTGATTGTAGGGCCGTCCTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGCAAAAATTGTTGCTGGCAAGTGAATGTCTGGGGTGCGTAGCGTCCAAAAGAGAAGATGTCTTTTTGTCTTATCGTAGAGTCAAGTCAAGTATTTCTATTATTATTTAGAGATTTGAGATCTTTGTATTGGGTGCATCAAAGCTTTTATATTAAATTATTTCCGTAGCATTTTTTCATCCCGAAGCAATTTAATGCAAGACAATGAATGAACGGCATTGCGGTTCCCTTTTGTGTGCACAGCCCGACAGGCCCGATGAGTTGATACGAATTGAAGAGGCTGGTGGAAGGGTCATTAACTGGAATGGCCAGCGCGTGCTTGGTGTTCTTGCCACTTCACGATCCATAGGAGATCAGTACCTTCGACCTTATGTAATATCAAAACCAGAAGTGACAGTGACCAAGCGAAGCAGCAAGGATGAATTTCTCATACTAGCAAGTGATGGATTGTGGGATGTGATGTCAAGTGAAGTTGCGTGCCAAGTTGTAAGGAAATGCTTCCACGGGCAGATTAGGAGAGTGTGCGATGGAGTTGGGAATCATCAAAACCGTGCTACCGAGGCTGCAGGCCTCTTGGCAGAGATAGCATTGGCAAAGGGAAGTAGAGATAACACCAGTGTCATTGTAGTTGAGCTAAGAGGATCAGTAACAACTGATTGAGGCCTCATTTCTGCCAAAACATGTATCTTTATTTTTATTTTCTTCTCTACTTATTGGCTTGCTGCTTTTGGACTAATATCTACTCAGGATGTGCCTCTTCAATGCCACAAGAGATTATCTACTTGATAATAATGAGTACATGCTATGTCACATTAGTGTTTTTTTTTTTTTGAAAAAACGACCTCCAATTAATTCTTTAAATATCTACAACATGTCAATACAT

Coding sequences of Glyma14g32430

Limit To All Plant Sequences

>Glyma14g32430.1   sequence type=CDS   gene model=Glyma14g32430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAGTTCGTTGCATGCAAAAACGATTATGAAGACGCCAAAACGCCACTCGCCGCCGCCAAATTCTTCCCTGCGAGTGGAGTCTGATTCCGGCGAAATCGTCACGAGGTTCAAGAACGGTCGCCGGAGAAGAATTAAAATCAAGCGAATGAAATACACTTGCCAGACGAAGATCCGCGTCAGGAATGACGCCGGCGCCGGCGGCGTGTCTCAACTTCTGGCGGTGGATTCTGAAGGAGAGAAGAGAGAGATTCACGAGAACGTGGAGATATCGCTGTCGCTGGCTTCGTCGTCGTCGGAAGAGGAAGAGCGATTGTCGTCGAAGCAAAACGACGGCGTTTTGTCGTACGGGTCGGCATCGGTGATAGGGAGCAGGAAGGAGATGGAGGACGCGGTGAGTGAGGAGATAGGGTTTGCTGCGAAGTGCGACTTCTTCGCGGTGTACGACGGCCACGGCGGAGCTCAGGTGGCGGAGGCGTGCAGGGAGAGGCTGTACAGGCTGGTGGCGGAGGAGATGGAGAGGAGTGCGAGTCACGTGGAATGGGACTGGCGGGGAGTGATGGAAGGGTGTTTTCGGAAAATGGACTGCGAGGTTGCCGGCAATGCGGCTGTCAGGACGGTGGGTTCCACGGCTGTTGTCGCCGTCGTCGCGGCGGCGGAGGTTGTCGTTGCTAATTGCGGTGATTGTAGGGCCGTCCTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGCCCGACAGGCCCGATGAGTTGATACGAATTGAAGAGGCTGGTGGAAGGGTCATTAACTGGAATGGCCAGCGCGTGCTTGGTGTTCTTGCCACTTCACGATCCATAGGAGATCAGTACCTTCGACCTTATGTAATATCAAAACCAGAAGTGACAGTGACCAAGCGAAGCAGCAAGGATGAATTTCTCATACTAGCAAGTGATGGATTGTGGGATGTGATGTCAAGTGAAGTTGCGTGCCAAGTTGTAAGGAAATGCTTCCACGGGCAGATTAGGAGAGTGTGCGATGGAGTTGGGAATCATCAAAACCGTGCTACCGAGGCTGCAGGCCTCTTGGCAGAGATAGCATTGGCAAAGGGAAGTAGAGATAACACCAGTGTCATTGTAGTTGAGCTAAGAGGATCAGTAACAACTGATTGA

>Glyma14g32430.2   sequence type=CDS   gene model=Glyma14g32430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAGTTCGTTGCATGCAAAAACGATTATGAAGACGCCAAAACGCCACTCGCCGCCGCCAAATTCTTCCCTGCGAGTGGAGTCTGATTCCGGCGAAATCGTCACGAGGTTCAAGAACGGTCGCCGGAGAAGAATTAAAATCAAGCGAATGAAATACACTTGCCAGACGAAGATCCGCGTCAGGAATGACGCCGGCGCCGGCGGCGTGTCTCAACTTCTGGCGGTGGATTCTGAAGGAGAGAAGAGAGAGATTCACGAGAACGTGGAGATATCGCTGTCGCTGGCTTCGTCGTCGTCGGAAGAGGAAGAGCGATTGTCGTCGAAGCAAAACGACGGCGTTTTGTCGTACGGGTCGGCATCGGTGATAGGGAGCAGGAAGGAGATGGAGGACGCGGTGAGTGAGGAGATAGGGTTTGCTGCGAAGTGCGACTTCTTCGCGGTGTACGACGGCCACGGCGGAGCTCAGGTGGCGGAGGCGTGCAGGGAGAGGCTGTACAGGCTGGTGGCGGAGGAGATGGAGAGGAGTGCGAGTCACGTGGAATGGGACTGGCGGGGAGTGATGGAAGGGTGTTTTCGGAAAATGGACTGCGAGGTTGCCGGCAATGCGGCTGTCAGGACGGTGGGTTCCACGGCTGTTGTCGCCGTCGTCGCGGCGGCGGAGGTTGTCGTTGCTAATTGCGGTGATTGTAGGGCCGTCCTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGCAAAAATTGTTGCTGGCAAGTGAATGTCTGGGGTGCGTAGCGTCCAAAAGAGAAGATGTCTTTTTGTCTTATCGTAGAGTCAAGTCAAGTATTTCTATTATTATTTAG

Predicted protein sequences of Glyma14g32430

Limit To All Plant Sequences

>Glyma14g32430.1   sequence type=predicted peptide   gene model=Glyma14g32430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSSLHAKTIMKTPKRHSPPPNSSLRVESDSGEIVTRFKNGRRRRIKIKRMKYTCQTKIRVRNDAGAGGVSQLLAVDSEGEKREIHENVEISLSLASSSSEEEERLSSKQNDGVLSYGSASVIGSRKEMEDAVSEEIGFAAKCDFFAVYDGHGGAQVAEACRERLYRLVAEEMERSASHVEWDWRGVMEGCFRKMDCEVAGNAAVRTVGSTAVVAVVAAAEVVVANCGDCRAVLGRGGEAVDLSSDHKPDRPDELIRIEEAGGRVINWNGQRVLGVLATSRSIGDQYLRPYVISKPEVTVTKRSSKDEFLILASDGLWDVMSSEVACQVVRKCFHGQIRRVCDGVGNHQNRATEAAGLLAEIALAKGSRDNTSVIVVELRGSVTTD*

>Glyma14g32430.2   sequence type=predicted peptide   gene model=Glyma14g32430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSSLHAKTIMKTPKRHSPPPNSSLRVESDSGEIVTRFKNGRRRRIKIKRMKYTCQTKIRVRNDAGAGGVSQLLAVDSEGEKREIHENVEISLSLASSSSEEEERLSSKQNDGVLSYGSASVIGSRKEMEDAVSEEIGFAAKCDFFAVYDGHGGAQVAEACRERLYRLVAEEMERSASHVEWDWRGVMEGCFRKMDCEVAGNAAVRTVGSTAVVAVVAAAEVVVANCGDCRAVLGRGGEAVDLSSDHKQKLLLASECLGCVASKREDVFLSYRRVKSSISIII*

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