SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G24400 | AT | Annotation by Michelle Graham. TAIR10: NagB/RpiA/CoA transferase-like superfamily protein | chr5:8330532-8331784 REVERSE LENGTH=325 | SoyBase | E_val: 3.00E-96 | ISS |
| GO:0002229 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to oomycetes | SoyBase | N/A | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0071461 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to redox state | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0017057 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 6-phosphogluconolactonase activity | SoyBase | N/A | ISS |
| KOG3147 | KOG | 6-phosphogluconolactonase - like protein | JGI | ISS | |
| PTHR11054 | Panther | 6-PHOSPHOGLUCONOLACTONASE | JGI | ISS | |
| PF01182 | PFAM | Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase | JGI | ISS | |
| UniRef100_G7J870 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 6-phosphogluconolactonase n=1 Tax=Medicago truncatula RepID=G7J870_MEDTR | SoyBase | E_val: 5.00E-121 | ISS |
| UniRef100_I1MAJ4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAJ4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g32190 not represented in the dataset |
Glyma14g32190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g161800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g32190.1 sequence type=CDS gene model=Glyma14g32190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACTTCCACAATTTTCTCCCTGTCATGCACTCCCAAAAGCACATTGCTTTCCAAACCAAAGCAACACACACTATCCCCTTCCATGTCATTGCTGTCACCGGAAGTGGTACAAAAAAGCCTCTACCAGCCTCTAAGAAACAATGTATCTCCAATTTCTATGAAGCCTAAGAGAAATCATGTGGGTGGCTTAGTGAAGGCATCAATGAATAACAAGAACGTGGAGGTATTCTCCAAGGAACATCTTGCTGTGTCTCTGGCCAAATATGTTGCTGATCTATCCAATAAATTCATCAAAGAAAGAGGATACTTCGCTATCGCTCTTTCCGCTGGGTCTATCAAGTACCTCAGGAAGCTAGTGGAACCTCACTATTCTAACACTATCCAATGGTCTAAGTGGCATATATTTTGGGTAGATGAGAAAGTGGTGCCAAAGACTCACGTGGATAGCAACTACAAGCTTGCTTACGATGGATTTATCTCCAAGGTGCCAATTCCTCCATACAATGTCAACACAATTGATGATGCCTTGCCAGCTGATGGAGCAGCTGATGTTTATGAGACAACTCTCAAACGCTTGGTTGCAAGTAATGTGGTCGCAAAATCACTAGCCACAGGATTTCCAAAATTTGATCTTGTGTTGTTAGACATGGGTCCTGATGGGCATGTGGCATCTCTGTTCCCAGAGCACCCTACACTGAATGAGACCAAAAAATGGGTTACCTTTCTCAAGAATGCACCCACCGCACCACCAGAGAGGATCACCTTTACCTTGCCAGTGATCAATGCTTCTTCAAACATAGCAATGGTGGTGACTGGTGCTGGTAAAGCAGATGCAGTCTACTCTGCACTGGAGGAAGCTCCTAGTGATTATAAGCTCCCTGCTCAATTGGTTTCACCTAGAGAAGGAGAGTTGAAATGGTTCTTAGACAAGGGAGCTGCATCAAGGTTATGGTAG
>Glyma14g32190.1 sequence type=predicted peptide gene model=Glyma14g32190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATSTIFSLSCTPKSTLLSKPKQHTLSPSMSLLSPEVVQKSLYQPLRNNVSPISMKPKRNHVGGLVKASMNNKNVEVFSKEHLAVSLAKYVADLSNKFIKERGYFAIALSAGSIKYLRKLVEPHYSNTIQWSKWHIFWVDEKVVPKTHVDSNYKLAYDGFISKVPIPPYNVNTIDDALPADGAADVYETTLKRLVASNVVAKSLATGFPKFDLVLLDMGPDGHVASLFPEHPTLNETKKWVTFLKNAPTAPPERITFTLPVINASSNIAMVVTGAGKADAVYSALEEAPSDYKLPAQLVSPREGELKWFLDKGAASRLW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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