Glyma14g31890 - SoyBase

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Report for Sequence Feature Glyma14g31890

Feature Type:	gene_model
Chromosome:	Gm14
Start:	38885334
stop:	38896544
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g31890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53140	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr5:21549228-21552132 FORWARD LENGTH=420	SoyBase	E_val: 9.00E-178	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0008287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein serine/threonine phosphatase complex	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF186	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_B5A9S6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2C n=1 Tax=Hevea brasiliensis RepID=B5A9S6_HEVBR	SoyBase	E_val: 0	ISS
UniRef100_I1MAJ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAJ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g31890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g31890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g161400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g31890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g31890

Limit To All Plant Sequences

>Glyma14g31890.3   sequence type=transcript   gene model=Glyma14g31890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAGAAGTATGATATGAGTACTTGCCAGGCTTACACGTTGCTATCTTTCTCAGGGTTTCGTTCTCATTCTAGATTCCCACATAGAAACTGTTTCTGCGTTATTTGATTCTTCTCCCAACCTTTCCTTGATCCGGATTAAGATTCCTGGCACGTTTTTGAACCGATCCACTTCATATCGGATCCGAATTCGAACATTCAACATCTGATTCCGCAATTCTCTCCGAATTTTGCTTTGAATTTGCTTTTCGAATAGATGATTACAGTTCCTTAGACAGTTCAATTATTAAAAAAAGGTACATCATTTAGATGGTATGCCGCAGTTGTGTAAGGTCTTTGGTTGTTCAAGCTGGAACCTTCGCCAACAGAGTGAGAATCAACGGATTTGGGAGGAGTTTGCAGGCAGTTCAGAGTTTTTCTCATTGGCCAATTCGTGAATACAAGACAACCACAAGGATGATGGTTGATACGGGTTCTATGTCAAGGGCTGGACCCCTTGTTGATACGATGCCAGAGAAAGATGATGATGGTCGGTTTGCCAGTGGAGGGTGGAAAAGTGACGATGGAAGACTTAGCTGTGGGTATTCAAGTTTTAGGGGAAAGAGAGTGACAATGGAGGATTTTTATGATATTAAGACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATGGTCACGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATAATCTCTTGAAGCATCCAAAATTTTTGACAGATGCCAAATTGGCTATAAGTGAAACATATCAACAGACTGATGCTAATTTTCTGGATTCTGAAAAGGACACCTTCAGGGATGATGGATCTACAGCTTCGACAGCAGTTTTGGTTGATAACCATCTTTATGTAGCAAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGTAAAGCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGAGAATCGAGAATGCTGGTGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGGACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGAAAGTTAACAGAAGCAGCATTTTCTCGTGGGAGTGCAGATAACATTACATGCATTGTGGTGCAATTCCACCATGAGAAAGCAGAACTAGCTAATCCTGACAAAGCAGAAGCAGCTAGTGCTCAGCATGAGTAGATGATGTGAAAGCACAAAATGCATGTGTTGGTTATATTCGCGTCAAATTGAATGAATTGAGGTCAGCATATGCATGATGGCTCACTCTGCATGTCAAGGCAATTTGTTTATTCATTAGTTTTCTTATGTAAGTCACTCTTGTTCTTGTATTGGGATTTTTGCATCGTGTTCTTCTGATGATTTCAGCGTGTGTCCGTATATATTTAAAGTTTTCCTGTTTGTAGAGAAATCAAGTTGGTATTTTTGTTCTGATCTAATAAATGCAATATGCATTTTTTTTTATCATACAGATATGTGATTAAGTAGAAATCGATTAATTTATCATTGTCGTCA

>Glyma14g31890.4   sequence type=transcript   gene model=Glyma14g31890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAGAAGTATGATATGAGTACTTGCCAGGCTTACACGTTGCTATCTTTCTCAGGTACATCATTTAGATGGTATGCCGCAGTTGTGTAAGGTCTTTGGTTGTTCAAGCTGGAACCTTCGCCAACAGAGTGAGAATCAACGGATTTGGGAGGAGTTTGCAGGCAGTTCAGAGTTTTTCTCATTGGCCAATTCGTGAATACAAGACAACCACAAGGATGATGGTTGATACGGGTTCTATGTCAAGGGCTGGACCCCTTGTTGATACGATGCCAGAGAAAGATGATGATGGTCGGTTTGCCAGTGGAGGGTGGAAAAGTGACGATGGAAGACTTAGCTGTGGGTATTCAAGTTTTAGGGGAAAGAGAGTGACAATGGAGGATTTTTATGATATTAAGACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATGGTCACGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATAATCTCTTGAAGCATCCAAAATTTTTGACAGATGCCAAATTGGCTATAAGTGAAACATATCAACAGACTGATGCTAATTTTCTGGATTCTGAAAAGGACACCTTCAGGGATGATGGATCTACAGCTTCGACAGCAGTTTTGGTTGATAACCATCTTTATGTAGCAAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGTAAAGCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGAGAATCGAGAATGCTGGTGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGGACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGAAAGTTAACAGAAGCAGCATTTTCTCGTGGGAGTGCAGATAACATTACATGCATTGTGGTGCAATTCCACCATGAGAAAGCAGAACTAGCTAATCCTGACAAAGCAGAAGCAGCTAGTGCTCAGCATGAGTAGATGATGTGAAAGCACAAAATGCATGTGTTGGTTATATTCGCGTCAAATTGAATGAATTGAGGTCAGCATATGCATGATGGCTCACTCTGCATGTCAAGGCAATTTGTTTATTCATTAGTTTTCTTATGTAAGTCACTCTTGTTCTTGTATTGGGATTTTTGCATCGTGTTCTTCTGATGATTTCAGCGTGTGTCCGTATATATTTAAAGTTTTCCTGTTTGTAGAGAAATCAAGTTGGTATTTTTGTTCTGATCTAATAAATGCAATATGCATTTTTTTTTATCATACAGATATGTGATTAAGTAGAAATCGATTAATTTATCATTGTCGTCA

Coding sequences of Glyma14g31890

Limit To All Plant Sequences

>Glyma14g31890.2   sequence type=CDS   gene model=Glyma14g31890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATGCCGCAGTTGTGTAAGGTCTTTGGTTGTTCAAGCTGGAACCTTCGCCAACAGAGTGAGAATCAACGGATTTGGGAGGAGTTTGCAGGCAGTTCAGAGTTTTTCTCATTGGCCAATTCGTGAATACAAGACAACCACAAGGATGATGGTTGATACGGGTTCTATGTCAAGGGCTGGACCCCTTGTTGATACGATGCCAGAGAAAGATGATGATGGTCGGTTTGCCAGTGGAGGGTGGAAAAGTGACGATGGAAGACTTAGCTGTGGGTATTCAAGTTTTAGGGGAAAGAGAGTGACAATGGAGGATTTTTATGATATTAAGACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATGGTCACGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATAATCTCTTGAAGCATCCAAAATTTTTGACAGATGCCAAATTGGCTATAAGTGAAACATATCAACAGACTGATGCTAATTTTCTGGATTCTGAAAAGGACACCTTCAGGGATGATGGATCTACAGCTTCGACAGCAGTTTTGGTTGATAACCATCTTTATGTAGCAAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGTAAAGCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGAGAATCGAGAATGCTGGTGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGGACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGAAAGTTAACAGAAGCAGCATTTTCTCGTGGGAGTGCAGATAACATTACATGCATTGTGGTGCAATTCCACCATGAGAAAGCAGAACTAGCTAATCCTGACAAAGCAGAAGCAGCTAGTGCTCAGCATGAGTAG

>Glyma14g31890.3   sequence type=CDS   gene model=Glyma14g31890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATGCCGCAGTTGTGTAAGGTCTTTGGTTGTTCAAGCTGGAACCTTCGCCAACAGAGTGAGAATCAACGGATTTGGGAGGAGTTTGCAGGCAGTTCAGAGTTTTTCTCATTGGCCAATTCGTGAATACAAGACAACCACAAGGATGATGGTTGATACGGGTTCTATGTCAAGGGCTGGACCCCTTGTTGATACGATGCCAGAGAAAGATGATGATGGTCGGTTTGCCAGTGGAGGGTGGAAAAGTGACGATGGAAGACTTAGCTGTGGGTATTCAAGTTTTAGGGGAAAGAGAGTGACAATGGAGGATTTTTATGATATTAAGACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATGGTCACGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATAATCTCTTGAAGCATCCAAAATTTTTGACAGATGCCAAATTGGCTATAAGTGAAACATATCAACAGACTGATGCTAATTTTCTGGATTCTGAAAAGGACACCTTCAGGGATGATGGATCTACAGCTTCGACAGCAGTTTTGGTTGATAACCATCTTTATGTAGCAAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGTAAAGCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGAGAATCGAGAATGCTGGTGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGGACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGAAAGTTAACAGAAGCAGCATTTTCTCGTGGGAGTGCAGATAACATTACATGCATTGTGGTGCAATTCCACCATGAGAAAGCAGAACTAGCTAATCCTGACAAAGCAGAAGCAGCTAGTGCTCAGCATGAGTAG

>Glyma14g31890.4   sequence type=CDS   gene model=Glyma14g31890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATGCCGCAGTTGTGTAAGGTCTTTGGTTGTTCAAGCTGGAACCTTCGCCAACAGAGTGAGAATCAACGGATTTGGGAGGAGTTTGCAGGCAGTTCAGAGTTTTTCTCATTGGCCAATTCGTGAATACAAGACAACCACAAGGATGATGGTTGATACGGGTTCTATGTCAAGGGCTGGACCCCTTGTTGATACGATGCCAGAGAAAGATGATGATGGTCGGTTTGCCAGTGGAGGGTGGAAAAGTGACGATGGAAGACTTAGCTGTGGGTATTCAAGTTTTAGGGGAAAGAGAGTGACAATGGAGGATTTTTATGATATTAAGACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATGGTCACGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATAATCTCTTGAAGCATCCAAAATTTTTGACAGATGCCAAATTGGCTATAAGTGAAACATATCAACAGACTGATGCTAATTTTCTGGATTCTGAAAAGGACACCTTCAGGGATGATGGATCTACAGCTTCGACAGCAGTTTTGGTTGATAACCATCTTTATGTAGCAAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGTAAAGCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGAGAATCGAGAATGCTGGTGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGGACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGAAAGTTAACAGAAGCAGCATTTTCTCGTGGGAGTGCAGATAACATTACATGCATTGTGGTGCAATTCCACCATGAGAAAGCAGAACTAGCTAATCCTGACAAAGCAGAAGCAGCTAGTGCTCAGCATGAGTAG

Predicted protein sequences of Glyma14g31890

Limit To All Plant Sequences

>Glyma14g31890.2   sequence type=predicted peptide   gene model=Glyma14g31890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVCRSCVRSLVVQAGTFANRVRINGFGRSLQAVQSFSHWPIREYKTTTRMMVDTGSMSRAGPLVDTMPEKDDDGRFASGGWKSDDGRLSCGYSSFRGKRVTMEDFYDIKTLKIGGQSICLFGIFDGHGGSRAAEYLKEHLFDNLLKHPKFLTDAKLAISETYQQTDANFLDSEKDTFRDDGSTASTAVLVDNHLYVANVGDSRTIISKAGKANALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDQEIDEQIELIILASDGLWDVVQNDDAVSLARTEEEPEAAARKLTEAAFSRGSADNITCIVVQFHHEKAELANPDKAEAASAQHE*

>Glyma14g31890.3   sequence type=predicted peptide   gene model=Glyma14g31890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVCRSCVRSLVVQAGTFANRVRINGFGRSLQAVQSFSHWPIREYKTTTRMMVDTGSMSRAGPLVDTMPEKDDDGRFASGGWKSDDGRLSCGYSSFRGKRVTMEDFYDIKTLKIGGQSICLFGIFDGHGGSRAAEYLKEHLFDNLLKHPKFLTDAKLAISETYQQTDANFLDSEKDTFRDDGSTASTAVLVDNHLYVANVGDSRTIISKAGKANALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDQEIDEQIELIILASDGLWDVVQNDDAVSLARTEEEPEAAARKLTEAAFSRGSADNITCIVVQFHHEKAELANPDKAEAASAQHE*

>Glyma14g31890.4   sequence type=predicted peptide   gene model=Glyma14g31890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVCRSCVRSLVVQAGTFANRVRINGFGRSLQAVQSFSHWPIREYKTTTRMMVDTGSMSRAGPLVDTMPEKDDDGRFASGGWKSDDGRLSCGYSSFRGKRVTMEDFYDIKTLKIGGQSICLFGIFDGHGGSRAAEYLKEHLFDNLLKHPKFLTDAKLAISETYQQTDANFLDSEKDTFRDDGSTASTAVLVDNHLYVANVGDSRTIISKAGKANALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDQEIDEQIELIILASDGLWDVVQNDDAVSLARTEEEPEAAARKLTEAAFSRGSADNITCIVVQFHHEKAELANPDKAEAASAQHE*

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