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Report for Sequence Feature Glyma14g31385

Feature Type:gene_model
Chromosome:Gm14
Start:38164947
stop:38168344
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g31385
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53210AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:21586606-21588941 REVERSE LENGTH=364 SoyBaseE_val: 5.00E-96ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010374GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex development SoyBaseN/AISS
GO:0042127GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
KOG4029 KOG Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 JGI ISS
PTHR11534Panther MYOGENIC FACTOR JGI ISS
PTHR11534:SF7Panther MYOGENIC FACTOR MYF-5 JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_G7J6A1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor SPEECHLESS n=1 Tax=Medicago truncatula RepID=G7J6A1_MEDTR SoyBaseE_val: 3.00E-138ISS
UniRef100_UPI000233B833UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B833 related cluster n=1 Tax=unknown RepID=UPI000233B833 SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g31385
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g31385 not represented in the dataset
Glyma14g31385 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g31385 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g160700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g31385
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g31385
>Glyma14g31385.1   sequence type=CDS   gene model=Glyma14g31385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCACAGAAAAGTCCATTAATGGATGAAAGCCTATGTGATGTTTCCCATGATACTGAGTTTGGGGACACACACTTTGGTGGAGGGGATCTTTTTTCCATTTTGGAGAGCCTAGAAGACTTGAAAGATTTTCCTTCCACCAACAATGAAGCTGCTGTTATTGGCCCAACTTTCAAAGAAAATGAGCAAAACTCAAAAAAGGTCTCAATATCTTCACGTGCCCCACAAGATTCTGAAACTGAGCCTGAAATCTCACCAAAAAGCAAGAGACAAAAGCTTAGTCCCACATTGGTTGAGGAACCACAGAAGGTGTCTCACATAACCGTGGAGCGCAACAGAAGAAAGGAAATGAATGAAAACTTATCGATCTTGAGGTCACTTATGCCTTTCTTTTATGTCAAGCGGGGAGACCAAGCATCAATAATTGGAGGTGTGATTGATTACATCAACGAGTTGCAGCAGCTTCTACAGTGCCTAGAGGCCAAGAAACAAAGAAAAGTTTACAATGAAGTCCTAAGCCCAAGGCTAGTTTCAAGCCTGAGGCCTTCATCACTAAGTCCTGGAAAACCACCCTTGAGCCCTAGAATAAACCTTCCCATTAGTCCAAGGAATCCACAACCAGGTAGCCCTTACAAGCTCAGATTGCAGCCAGGTTACCTTTCCCCCACCATAGCCAACTCTCCTACTTCTTCAGCTTCTTCTTCCATCAACGATAATATCAATGAGCTTTTTGCCAATTCAAAGTCCATTATAGCTGATGTTGAGGTCAAGTTTTCAAGTCCACATGTGCTTCTGAAGACTGTGTCACTACCGATTCGAGGCCAGGCCATGAGAATAATATCAGCTCTTGAAGACCTAGCACTTGAAATCCTCCATGTGAACATTAGCACTGCTGATGAAACCATGCTAAACTCAGTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCTGAAGAACTTGCTCAACAAATCCAGCAAACATTCTGCTAA
Predicted protein sequences of Glyma14g31385
>Glyma14g31385.1   sequence type=predicted peptide   gene model=Glyma14g31385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPQKSPLMDESLCDVSHDTEFGDTHFGGGDLFSILESLEDLKDFPSTNNEAAVIGPTFKENEQNSKKVSISSRAPQDSETEPEISPKSKRQKLSPTLVEEPQKVSHITVERNRRKEMNENLSILRSLMPFFYVKRGDQASIIGGVIDYINELQQLLQCLEAKKQRKVYNEVLSPRLVSSLRPSSLSPGKPPLSPRINLPISPRNPQPGSPYKLRLQPGYLSPTIANSPTSSASSSINDNINELFANSKSIIADVEVKFSSPHVLLKTVSLPIRGQAMRIISALEDLALEILHVNISTADETMLNSVTIKIGIECQLSAEELAQQIQQTFC*






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