Glyma14g31370 - SoyBase

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Report for Sequence Feature Glyma14g31370

Feature Type:	gene_model
Chromosome:	Gm14
Start:	38078944
stop:	38084223
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g31370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24120	AT	Annotation by Michelle Graham. TAIR10: sigma factor E \| chr5:8157794-8159746 REVERSE LENGTH=517	SoyBase	E_val: 0	ISS
GO:0006352	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0010264	GO-bp	Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0071483	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to blue light	SoyBase	N/A	ISS
GO:2001141	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of RNA biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0003899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity	SoyBase	N/A	ISS
GO:0016987	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sigma factor activity	SoyBase	N/A	ISS
PF04539	PFAM	Sigma-70 region 3	JGI		ISS
PF04542	PFAM	Sigma-70 region 2	JGI		ISS
PF04545	PFAM	Sigma-70, region 4	JGI		ISS
UniRef100_I0IJN9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Sigma-like factor 5A n=1 Tax=Glycine max RepID=I0IJN9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I0IJN9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sigma-like factor 5A n=1 Tax=Glycine max RepID=I0IJN9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g31370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g31370 not represented in the dataset	Glyma14g31370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g31370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g160600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g31370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g31370

Limit To All Plant Sequences

>Glyma14g31370.1   sequence type=CDS   gene model=Glyma14g31370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTTGTTACTGTTTCTACCTTAGCTGCTAGGACGCCATTAAGATTGAATACAAGGTTGACCAGTCATCAGCAGGTGCATAAAAGACCTTTAATTGTAGCTTTTAAAGGAAATAAATTGAATAAAGCCGCTTTGGTTTCACCTCAGGAGCAAATTCCTCTACCCATAGAAACAGCAAAGAAAGACCAAAAAAGGGTAGGAAAGACTAGTGAGTCTCTGAAGAGAGTGAGAGCTGTCTCTATTGTTGAAACCTCTCCATGCACCTTGGATATGGACTACAATGAAGCTGCAGCCAAACTTGAAAATATATATAAACTCAGCCCTGTATCTGATACCTGTAATATGGAAGATATTGATAGTAAAGTCGAGAGAGTCTTGTGGAGGAGGAGGAAGGTTGGTAATGAACATGATGATGAAAATTGTGATATTGTGGTTAGAAACCAGAATAAGAAGGCCAAACGATTGAGTCTTGATAAGAGGATTACATTGAAAAATAATGCAAAGGAGGAAGTGATTGACCAAACTCAGAAGATAAGAAATGTTAAGAATAGAGTACAAAATATTGATGTGCTTATCAGGGATTATTCAGCATCAACTGATTTAGTTAGCATGGACTGGAAGAAAATGAAGATTCCGGCAGTTCTTCCTTCTTCAGAGCATGCATGGTTGTTCAAGTTGATGCAACCAATGAAGGCACTCCTACAAGCAAAAGAAGATTTACAGTCAGTGGGGAAAGAAATTACAGATGGTGAACTAGCTGATGCAACAAACATGAGCATTATTCAAGTAAGGAAAGCTATAGAGGTTGGCCGAGCTGCAAGAAACAAGCTCATAAAGCACAATCTCCGGCTTGTGTTGTTCGTGATTAGCAAATATTTTCAAGATTTTGCAAGTGGCCGGAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGACTTATCACAGCAATTGATCGTTTTGAGCCAAAAAGAAGACTTCAGCTATCTACATACAGTTTATTTTGGATAAGACATTCTATCGTTCGGTCCATAACCCTCTCAAGCTTCACACGTGTTCCTTTTGGACTTGAAAGGGTAAGAGTAGATATCCAAAGAACTAAACTTAAGTTAACATTTGAGCTCCAGAGGTCACCAACGGAAGAAGAGTTAGTAGAAAGAATTGGGATCTCACCTGAAAGATATTATGAAGTAATGAAGGCATCAAAACCCATTTTATCCCTTCATTCAAGACATATAACCACACAAGAGGAGTATATTAATGGGATTACTGATGTTGATGGTGTTAATGGTGATAATAGGAGGCAACTTGCTGTTCTAAGACTTGCTCTTGATGATGTGCTTGATTCCTTGAAGCCAAAGGAGAGCCTAGTGATCAGACAGAGATATGGACTTGATGGCAAGGGTGACAGGACATTGGGAGAAATCGCTGGGAACTTGAATATTTCTAGGGAAATGGTTCGGAAGCATGAAGTCAAGGCTCTCATGAAGCTTAAGCATCCAGCACGGTTGGATTATCTTCGTCGTTATGTTGTATAA

Predicted protein sequences of Glyma14g31370

Limit To All Plant Sequences

>Glyma14g31370.1   sequence type=predicted peptide   gene model=Glyma14g31370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVVTVSTLAARTPLRLNTRLTSHQQVHKRPLIVAFKGNKLNKAALVSPQEQIPLPIETAKKDQKRVGKTSESLKRVRAVSIVETSPCTLDMDYNEAAAKLENIYKLSPVSDTCNMEDIDSKVERVLWRRRKVGNEHDDENCDIVVRNQNKKAKRLSLDKRITLKNNAKEEVIDQTQKIRNVKNRVQNIDVLIRDYSASTDLVSMDWKKMKIPAVLPSSEHAWLFKLMQPMKALLQAKEDLQSVGKEITDGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVISKYFQDFASGRRFQDLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPFGLERVRVDIQRTKLKLTFELQRSPTEEELVERIGISPERYYEVMKASKPILSLHSRHITTQEEYINGITDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYVV*

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