SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G53190 | AT | Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein | chr5:21572417-21574284 REVERSE LENGTH=263 | SoyBase | E_val: 1.00E-98 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005887 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0051119 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1623 | KOG | Multitransmembrane protein | JGI | ISS | |
| PTHR10791 | Panther | STROMAL CELL PROTEIN/NODULIN MTN3-RELATED | JGI | ISS | |
| PF03083 | PFAM | MtN3/saliva family | JGI | ISS | |
| UniRef100_G7J6S0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein RUPTURED POLLEN GRAIN n=1 Tax=Medicago truncatula RepID=G7J6S0_MEDTR | SoyBase | E_val: 3.00E-123 | ISS |
| UniRef100_I1MAI3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAI3_SOYBN | SoyBase | E_val: 0 | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| SWEET38 | sucrose transporter gene 38 | |
| SWEET38 | sucrose effluxer gene 38 |
|
Glyma14g30940 not represented in the dataset |
Glyma14g30940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g160100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g30940.2 sequence type=transcript gene model=Glyma14g30940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATGCCCTCAAAGCCTTATAAATAGAGCATCCTCAAAAGGATCTCTTCATTGGTAGACATAACTTCCCCTTAGTATTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACTCTTACGTGTTACTCTCACTTCACAAAAGAGTAAAGAACTAAACATGGCAGAGACCCTTCGTATGGTTGTTGCTGTTATTGGGAATGTTGCCTCAGTGTCTCTTTATGCTGCACCAACGGTTACCTTCAAAAGGGTCATAAGGAAGAAAAGCACTGAGGAGTTTTCATGCATGCCTTACATCATTGCACTGCTGAACTGTCTTCTTTTCACTTGGTATGGATTGCCAGTAGTAAGCAACAAGTGGGAAAATTTACCTCTTGTCACAGTTAATGGAGTTGGGATTCTTTTTGAGTTATCCTATGTTCTCATTTATATCTGGTTTTCTACACCAAAAGGAAAGGTGAAGGTGGCCATGACAGCAGTACCAGTTCTTATAGTGTTCTGTGTGATTGCTATCGTATCAGCTTTTGTCTTCCCGGATCATCGCCACCGAAAGCTTCTGGTGGGTAGCATAGGCTTGGGGGTGTCAATAGCAATGTATGGATCTCCTTTGGTTGTAATGAAGAAAGTGATACAAACCAAGAGTGTGGAATTCATGCCACTTCCTTTATCTTTCTGCTCATTCTTGGCCAGTGTACTGTGGCTGACTTACGGACTCCTCATTCGAGACATTTTCGTTGCGGTGTGTACCAGCATCACCAATATTTAATTTAAAGATAAAATATGTTTTAAGTAATCTATTTAGGATAAAATTTGATTTTAATTTTTGAACTTCAACTTTAAATAATTTACTACCTAAATTTTATAAAAAAAGTGTAACTTTTGTTTTGTTCCTCCACGCAGTGAAAACCGTGTGATGAGTGACAAAATCACACTATTTTCTAGAAATTTAGAAATCAAATTACTCAAAATTAAAATATGGAGACTAAATATTAATTTTTATTGAAAGTACAGGAAAAAAAACATATTTTACCGTTAATTTGATTAATCATTGATCATATTATTATAAGTTTCACAAATATTAGGATGTTGAGTTGATGCTCCACCTGTGACAGGGACCAAGTCTGATTGGAACACCCTTAGGCATACTCCAACTCGTTCTCCACTGCAAATACTGGAAGAGGAGAGTGATGGAAGAGCCTAACAAGGTGGAATTGCAAAAGGGGAACAACACAGAGAAACTTGACTTGGAAATGGGACATGGAAAAGAATGTGTGACAGTTCCTAGTAACTGCAACTAATGATCCAGGACAGCCTAGATTGAAAGATTTCAACTGGTTCTTCTAGGATTAAGGATTCCGGTTTTAATGTTCGTTTCATTAACCAAAAAAAAAAAAGAAAAAAAAATAATGGTATTAATTAACTTGGTCAATTCAGCTAGTGCACTGGTGGATATATTCACCACACAGATTTAAATCATAGTTGCCTAGTGAATGTCCTGTTACATGCTTTCTTTTCGTGGAAATTGGTTTGTGCCACTTAGTTATGTTTATGAATTTAATCGAATATACTTCGATTTAACAAAGCCATATCTTAATTTATAGAATTTTAATGAGGAGATTTATATTCAA
>Glyma14g30940.1 sequence type=CDS gene model=Glyma14g30940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAGACCCTTCGTATGGTTGTTGCTGTTATTGGGAATGTTGCCTCAGTGTCTCTTTATGCTGCACCAACGGTTACCTTCAAAAGGGTCATAAGGAAGAAAAGCACTGAGGAGTTTTCATGCATGCCTTACATCATTGCACTGCTGAACTGTCTTCTTTTCACTTGGTATGGATTGCCAGTAGTAAGCAACAAGTGGGAAAATTTACCTCTTGTCACAGTTAATGGAGTTGGGATTCTTTTTGAGTTATCCTATGTTCTCATTTATATCTGGTTTTCTACACCAAAAGGAAAGGTGAAGGTGGCCATGACAGCAGTACCAGTTCTTATAGTGTTCTGTGTGATTGCTATCGTATCAGCTTTTGTCTTCCCGGATCATCGCCACCGAAAGCTTCTGGTGGGTAGCATAGGCTTGGGGGTGTCAATAGCAATGTATGGATCTCCTTTGGTTGTAATGAAGAAAGTGATACAAACCAAGAGTGTGGAATTCATGCCACTTCCTTTATCTTTCTGCTCATTCTTGGCCAGTGTACTGTGGCTGACTTACGGACTCCTCATTCGAGACATTTTCGTTGCGGGACCAAGTCTGATTGGAACACCCTTAGGCATACTCCAACTCGTTCTCCACTGCAAATACTGGAAGAGGAGAGTGATGGAAGAGCCTAACAAGGTGGAATTGCAAAAGGGGAACAACACAGAGAAACTTGACTTGGAAATGGGACATGGAAAAGAATGTGTGACAGTTCCTAGTAACTGCAACTAA >Glyma14g30940.2 sequence type=CDS gene model=Glyma14g30940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAGACCCTTCGTATGGTTGTTGCTGTTATTGGGAATGTTGCCTCAGTGTCTCTTTATGCTGCACCAACGGTTACCTTCAAAAGGGTCATAAGGAAGAAAAGCACTGAGGAGTTTTCATGCATGCCTTACATCATTGCACTGCTGAACTGTCTTCTTTTCACTTGGTATGGATTGCCAGTAGTAAGCAACAAGTGGGAAAATTTACCTCTTGTCACAGTTAATGGAGTTGGGATTCTTTTTGAGTTATCCTATGTTCTCATTTATATCTGGTTTTCTACACCAAAAGGAAAGGTGAAGGTGGCCATGACAGCAGTACCAGTTCTTATAGTGTTCTGTGTGATTGCTATCGTATCAGCTTTTGTCTTCCCGGATCATCGCCACCGAAAGCTTCTGGTGGGTAGCATAGGCTTGGGGGTGTCAATAGCAATGTATGGATCTCCTTTGGTTGTAATGAAGAAAGTGATACAAACCAAGAGTGTGGAATTCATGCCACTTCCTTTATCTTTCTGCTCATTCTTGGCCAGTGTACTGTGGCTGACTTACGGACTCCTCATTCGAGACATTTTCGTTGCGGTGTGTACCAGCATCACCAATATTTAA
>Glyma14g30940.1 sequence type=predicted peptide gene model=Glyma14g30940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAETLRMVVAVIGNVASVSLYAAPTVTFKRVIRKKSTEEFSCMPYIIALLNCLLFTWYGLPVVSNKWENLPLVTVNGVGILFELSYVLIYIWFSTPKGKVKVAMTAVPVLIVFCVIAIVSAFVFPDHRHRKLLVGSIGLGVSIAMYGSPLVVMKKVIQTKSVEFMPLPLSFCSFLASVLWLTYGLLIRDIFVAGPSLIGTPLGILQLVLHCKYWKRRVMEEPNKVELQKGNNTEKLDLEMGHGKECVTVPSNCN* >Glyma14g30940.2 sequence type=predicted peptide gene model=Glyma14g30940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAETLRMVVAVIGNVASVSLYAAPTVTFKRVIRKKSTEEFSCMPYIIALLNCLLFTWYGLPVVSNKWENLPLVTVNGVGILFELSYVLIYIWFSTPKGKVKVAMTAVPVLIVFCVIAIVSAFVFPDHRHRKLLVGSIGLGVSIAMYGSPLVVMKKVIQTKSVEFMPLPLSFCSFLASVLWLTYGLLIRDIFVAVCTSITNI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
