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Report for Sequence Feature Glyma14g30840

Feature Type:gene_model
Chromosome:Gm14
Start:37460393
stop:37460956
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g30840
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54200AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:20065731-20066438 FORWARD LENGTH=235 SoyBaseE_val: 7.00E-30ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0046658GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_I1N3D0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N3D0_SOYBN SoyBaseE_val: 2.00E-91ISS
UniRef100_Q1STP6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Harpin-induced 1 n=2 Tax=Medicago truncatula RepID=Q1STP6_MEDTR SoyBaseE_val: 8.00E-55ISS

Expression Patterns of Glyma14g30840
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g30840 not represented in the dataset
Glyma14g30840 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g30840 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g160000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g30840
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g30840
>Glyma14g30840.1   sequence type=CDS   gene model=Glyma14g30840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGCATTATGTGTAGCGATTGCACTTGTATTGTTAAGGGTGATCTTAGCATTGACAGTGTTCAAACCAAGGCACCCCATTACCAATGTGGATTCAATAAGGCTTCAGAACATGAGCTTGGGCATGGACATGTTTAGCATGAGTGTAAATGTGAACTTCACATTGGAAGTGGATGTTTTAGTCAACAACCCTAATAAGCTTGGATTCAATTACTACAATAGCTCTGCCCAACTCAATTATAGAACACAATTGATTGGGGAAGCTCCTATCCCCAATGGAGACATATTAGTTGAGGAGATTAAGGGACTTAACTTGACACTCACTGTTATGGCTGATCGTTTGGTCTCCAATTCTAAGGTCACCAAGGATGTTGCATTGGGTTCATTGCCCCTCAACACCTTAGTGAGAATTTTTTGCCAAGTCAACGTCTTAGGGTTTATGAAATTCTATGTGGCTTCCACCTCATACCAAAAATTCCCCATTTCCTCGAGTTCGAGAATTTGTACAAAGGAGCAGAGTTGTCCCCATTCACTTCAATATAGCAAAAGAATCACAAAATAG
Predicted protein sequences of Glyma14g30840
>Glyma14g30840.1   sequence type=predicted peptide   gene model=Glyma14g30840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVALCVAIALVLLRVILALTVFKPRHPITNVDSIRLQNMSLGMDMFSMSVNVNFTLEVDVLVNNPNKLGFNYYNSSAQLNYRTQLIGEAPIPNGDILVEEIKGLNLTLTVMADRLVSNSKVTKDVALGSLPLNTLVRIFCQVNVLGFMKFYVASTSYQKFPISSSSRICTKEQSCPHSLQYSKRITK*






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