Glyma14g30490 - SoyBase

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Report for Sequence Feature Glyma14g30490

Feature Type:	gene_model
Chromosome:	Gm14
Start:	37222162
stop:	37232700
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g30490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53180	AT	Annotation by Michelle Graham. TAIR10: polypyrimidine tract-binding protein 2 \| chr5:21568393-21571537 REVERSE LENGTH=429	SoyBase	E_val: 0	ISS
GO:0000381	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of alternative mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0006417	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of translation	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0043484	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of RNA splicing	SoyBase	N/A	ISS
GO:0000932	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasmic mRNA processing body	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG1190	KOG	Polypyrimidine tract-binding protein	JGI		ISS
PTHR11546	Panther	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	JGI		ISS
PTHR11546:SF16	Panther	PTB (POLYPYRIMIDINE TRACT-BINDING), RNA BINDING	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7J6S2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polypyrimidine tract-binding protein-like protein n=1 Tax=Medicago truncatula RepID=G7J6S2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MAI0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAI0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g30490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g30490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g159800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g30490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g30490

Limit To All Plant Sequences

>Glyma14g30490.4   sequence type=transcript   gene model=Glyma14g30490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACAAAAATAAACATAAATGTTGAGACTGAGCCTCGTCGTACATCTTTGGGTTGGGTTATCTGAAGCTTCTCCTGCGGAGGAAACATAACAGCGCTTGTTTGGGAACCCTAGTTTGGCAAACATTTCAAGAATCAGAGTCTTTTACCACTCTCAGTCCAAGGGACTGCGTATTTGGTGATTCCGTTCAACAGGTTTAGCATTATTATCTGAAATGGCATCGGTGTCTAGTCAGCAACAGTTCCGTTACACGCAGCCACCGTCAAAGGTTCTTCATTTGAGAAATTTGCCGTGGGAGTGTACAGAGGAGGAACTAATTGAGCTTGGGAAGCCATTTGGGAAAGTTGTGAACACAAAGTGCAACGTTGGAGCAAATCGTAATCAAGCTTTTATTGAATTTGCAGATTTAAATCAGGCGATTGCAATGATATCGTATTATGCCTCATCGTCGGAGCCTGCTCAAGTACGAGGGAAAACTGTGTATCTACAATATTCCAATAGGCAAGAAATAGTGAATAACAAAACTGCAGCAGATGTTGCTGGAAATGTACTGTTAGTTACAATTGAGGGTGAAGATGCACGCCTTGTCAGCATTGATGTCTTACACTTGGTCTTTTCAGCCTTTGGGTTTGTGCATAAGATTACTACTTTTGAGAAGACAGCAGGATTCCAGGCATTGGTGCAATTCTCAGATGCAGAAACTGCTACTTCTGCAAAGGATGCTTTGGATGGAAGAAGCATACCTAGGTACCTGCTTCCTGAACATATGGGACCATGTAGCCTTAAGATCACATATTCTGGACATTCAGACTTAAGTGTCAAGTTTCAAAGTCACAGAAGCAGAGACTACACTAATCCTTACCTCCCTGTTGCTCAATCTGCCATGGAGGGAAGTGGACAGCCCATGGTGGGTTTGGATGGAAAGAGGCTGGAGGCCGAGAGTAATGTTCTTCTTGCATCTATTGAGAACATGCAGTATGCTGTAACCTTGGATGTCTTACACATGGTTTTCTCTGCCTTTGGACCTGTCCAAAAGATTGCAATGTTTGACAAGAATGGTGGTTTACAGGCTCTGATTCAATATCCAGATATCCAAACAGCTGTTGTGGCCAAGGAAGCCTTGGAAGGACACTGCATATATGATGGAGGTTTTTGCAAGCTTCACATCTCGTATTCGCGTCATTCTGATCTTAGTATAAAGGTGAATAATGATAGAAGTAGAGACTATACTATTCCTAATGTACCACCACCTGTAGTGAATGCTCAGCCCTCAATTTTAGGGCAACATCCAGTTCCCATGACGGGTCCTCCTCCTCAACAGTACAATGGAGCTCAATACGCATCAGTTACTGAGCAGACTCTGATGCCTCAATCTCAGGCTGGATGGGGGACAGCTCCATCTCAGTCTATGCTGCAGATGCATAACAATCCTTACACGCCATCTGCTATGGTGCCACCGCAAACAGCCCCTGGAATGCAGTTTCCAAGTCACATTCAATAGCATCATGCATCTCATGTCTCTTACACAAAGTGGCGAACATAGTCAGCGCATCTGCAGAAGTGAGGACTACCATTTAAATTGTGGCTTTTCCTATGTGAGGAAACTGGCGTTTGCCAATGTGATTCCAAAATTCTCTCTCCCTTTGTTTATTATTAGATGAGATGAGATTTTGATTGTAAGCAATTGGCCAAGAACTTTTGGTTGGCTGGCAACACAGGAAAAAACTACACATTCTATTTTTCGTTTATTTTGACTTGGTTTGGCATTTGTTTTTCAGATATTGCTTTAAAAAAGTTAACAAGGCAATGAAATAAAAGTTGTTAATGGAATTCTTAGGTAATA

Coding sequences of Glyma14g30490

Limit To All Plant Sequences

>Glyma14g30490.3   sequence type=CDS   gene model=Glyma14g30490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCGGTGTCTAGTCAGCAACAGTTCCGTTACACGCAGCCACCGTCAAAGGTTCTTCATTTGAGAAATTTGCCGTGGGAGTGTACAGAGGAGGAACTAATTGAGCTTGGGAAGCCATTTGGGAAAGTTGTGAACACAAAGTGCAACGTTGGAGCAAATCGTAATCAAGCTTTTATTGAATTTGCAGATTTAAATCAGGCGATTGCAATGATATCGTATTATGCCTCATCGTCGGAGCCTGCTCAAGTACGAGGGAAAACTGTGTATCTACAATATTCCAATAGGCAAGAAATAGTGAATAACAAAACTGCAGCAGATGTTGCTGGAAATGTACTGTTAGTTACAATTGAGGGTGAAGATGCACGCCTTGTCAGCATTGATGTCTTACACTTGGTCTTTTCAGCCTTTGGGTTTGTGCATAAGATTACTACTTTTGAGAAGACAGCAGGATTCCAGGCATTGGTGCAATTCTCAGATGCAGAAACTGCTACTTCTGCAAAGGATGCTTTGGATGGAAGAAGCATACCTAGGTACCTGCTTCCTGAACATATGGGACCATGTAGCCTTAAGATCACATATTCTGGACATTCAGACTTAAGTGTCAAGTTTCAAAGTCACAGAAGCAGAGACTACACTAATCCTTACCTCCCTGTTGCTCAATCTGCCATGGAGGGAAGTGGACAGCCCATGGTGGGTTTGGATGGAAAGAGGCTGGAGGCCGAGAGTAATGTTCTTCTTGCATCTATTGAGAACATGCAGTATGCTGTAACCTTGGATGTCTTACACATGGTTTTCTCTGCCTTTGGACCTGTCCAAAAGATTGCAATGTTTGACAAGAATGGTGGTTTACAGGCTCTGATTCAATATCCAGATATCCAAACAGCTGTTGTGGCCAAGGAAGCCTTGGAAGGACACTGCATATATGATGGAGGTTTTTGCAAGCTTCACATCTCGTATTCGCGTCATTCTGATCTTAGTATAAAGGTGAATAATGATAGAAGTAGAGACTATACTATTCCTAATGTACCACCACCTGTAGTGAATGCTCAGCCCTCAATTTTAGGGCAACATCCAGTTCCCATGACGGGTCCTCCTCCTCAACAGTACAATGGAGCTCAATACGCATCAGTTACTGAGCAGACTCTGATGCCTCAATCTCAGGCTGGATGGGGGACAGCTCCATCTCAGTCTATGCTGCAGATGCATAACAATCCTTACACGCCATCTGCTATGGTGCCACCGCAAACAGCCCCTGGAATGCAGTTTCCAAGTCACATTCAATAG

>Glyma14g30490.4   sequence type=CDS   gene model=Glyma14g30490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCGGTGTCTAGTCAGCAACAGTTCCGTTACACGCAGCCACCGTCAAAGGTTCTTCATTTGAGAAATTTGCCGTGGGAGTGTACAGAGGAGGAACTAATTGAGCTTGGGAAGCCATTTGGGAAAGTTGTGAACACAAAGTGCAACGTTGGAGCAAATCGTAATCAAGCTTTTATTGAATTTGCAGATTTAAATCAGGCGATTGCAATGATATCGTATTATGCCTCATCGTCGGAGCCTGCTCAAGTACGAGGGAAAACTGTGTATCTACAATATTCCAATAGGCAAGAAATAGTGAATAACAAAACTGCAGCAGATGTTGCTGGAAATGTACTGTTAGTTACAATTGAGGGTGAAGATGCACGCCTTGTCAGCATTGATGTCTTACACTTGGTCTTTTCAGCCTTTGGGTTTGTGCATAAGATTACTACTTTTGAGAAGACAGCAGGATTCCAGGCATTGGTGCAATTCTCAGATGCAGAAACTGCTACTTCTGCAAAGGATGCTTTGGATGGAAGAAGCATACCTAGGTACCTGCTTCCTGAACATATGGGACCATGTAGCCTTAAGATCACATATTCTGGACATTCAGACTTAAGTGTCAAGTTTCAAAGTCACAGAAGCAGAGACTACACTAATCCTTACCTCCCTGTTGCTCAATCTGCCATGGAGGGAAGTGGACAGCCCATGGTGGGTTTGGATGGAAAGAGGCTGGAGGCCGAGAGTAATGTTCTTCTTGCATCTATTGAGAACATGCAGTATGCTGTAACCTTGGATGTCTTACACATGGTTTTCTCTGCCTTTGGACCTGTCCAAAAGATTGCAATGTTTGACAAGAATGGTGGTTTACAGGCTCTGATTCAATATCCAGATATCCAAACAGCTGTTGTGGCCAAGGAAGCCTTGGAAGGACACTGCATATATGATGGAGGTTTTTGCAAGCTTCACATCTCGTATTCGCGTCATTCTGATCTTAGTATAAAGGTGAATAATGATAGAAGTAGAGACTATACTATTCCTAATGTACCACCACCTGTAGTGAATGCTCAGCCCTCAATTTTAGGGCAACATCCAGTTCCCATGACGGGTCCTCCTCCTCAACAGTACAATGGAGCTCAATACGCATCAGTTACTGAGCAGACTCTGATGCCTCAATCTCAGGCTGGATGGGGGACAGCTCCATCTCAGTCTATGCTGCAGATGCATAACAATCCTTACACGCCATCTGCTATGGTGCCACCGCAAACAGCCCCTGGAATGCAGTTTCCAAGTCACATTCAATAG

Predicted protein sequences of Glyma14g30490

Limit To All Plant Sequences

>Glyma14g30490.3   sequence type=predicted peptide   gene model=Glyma14g30490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVSSQQQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVAGNVLLVTIEGEDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHMGPCSLKITYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGSGQPMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDIQTAVVAKEALEGHCIYDGGFCKLHISYSRHSDLSIKVNNDRSRDYTIPNVPPPVVNAQPSILGQHPVPMTGPPPQQYNGAQYASVTEQTLMPQSQAGWGTAPSQSMLQMHNNPYTPSAMVPPQTAPGMQFPSHIQ*

>Glyma14g30490.4   sequence type=predicted peptide   gene model=Glyma14g30490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVSSQQQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVAGNVLLVTIEGEDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHMGPCSLKITYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGSGQPMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDIQTAVVAKEALEGHCIYDGGFCKLHISYSRHSDLSIKVNNDRSRDYTIPNVPPPVVNAQPSILGQHPVPMTGPPPQQYNGAQYASVTEQTLMPQSQAGWGTAPSQSMLQMHNNPYTPSAMVPPQTAPGMQFPSHIQ*

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