Glyma14g30050 - SoyBase

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Report for Sequence Feature Glyma14g30050

Feature Type:	gene_model
Chromosome:	Gm14
Start:	36810548
stop:	36815452
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g30050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49290	AT	Annotation by Michelle Graham. TAIR10: ABL interactor-like protein 2 \| chr3:18273407-18275221 FORWARD LENGTH=312	SoyBase	E_val: 1.00E-148	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7I3G8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein ABIL3 n=1 Tax=Medicago truncatula RepID=G7I3G8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MAH7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAH7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g30050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g30050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g066300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g30050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g30050

Limit To All Plant Sequences

>Glyma14g30050.3   sequence type=transcript   gene model=Glyma14g30050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATGCGTAAGTGGTTGCAAATGAGTTCTGTAGCTGTCAATCACTTCTACTACTCCAAGTAAAAAAATAAAGACAAAATGGAACAGACATTCTGGTTTCTGAGGATCTATCCTAGCGTGATTTGCTCTCAGTCCTCACACTGTTGTCTTTATCCCTCCCTCTCTCGATTCCGCAAATGTAGTTAAAATAAAATCTCTCAACTGTCACTTTCTTCAAGCTTGGAAGAAAAAAATCGGGTACCAAACCATTCTTGGTAAGTGTTGGAGTGAAAGAAAGAAAGGGTGGTCCACAACGTGCTCTCTTACTCTCTTTTTGACATTTTCAAATGCGAAGTGGGTTTCATCTCTGTCATTCCATTTCCAATTGAGCTGAACAGCAAGCAAGCTCAGGTTGGTGCCTAGTTGGTTTGTTCCAATCAAACAACTGGGTTGAGAATTTTTGCTAATTCCGTTTTTGGAAAAATCATCGCCATCACCCTTAAGAGTTTCCTCATTGTTTTATCCAAGTTCCATCCTCCATCCTTTTCAGTCATGGGGAAGATTGCAACGCAGCCTTTATCTCGAGAGGCTTCGAATTATGATGAAGTTTTCATGCAACAGAGCTTGCTCTTTGATGATAGTCTAAAGGATTTGAAAAATCTGAGAACACAATTATACTCAGCAGCTGAATATTTTGAACTCTCTTACGCCAATGATGACCAAAAACAAATAGTGATTGAAACATTGAAGGATTATGCCATCAAAGCTCTTATAAATTCGGTGGATCATTTAGGGTCTGTGACCTATAAGGTGAATGACTTGTTAGATGAAAAGATTGTTGAAGTTTCTGAAACACAGCTACGTTTATCATGTATTCAACAGAGAATAAGTACGTGCCATGCATTCATGGATCATGAGGGGCGTACCCAGCAATCATTGGTGATTGATGCTCCAAAATATCATAAACGTTATATTTTGCCAGCCGGGGAGACCTTGCGTGGTGCCAAGTTAACAAAATCAATATACATGGGATGCAGCCTAGATGATGAAGATGACTGGCATCACTTCAGAAATGCTGTTCGAGCTACGATACGAGAAACGCCAACATCTACAGAGAGCAAAGGGCGTTCCCCATCACCTTCTTTGCAACCTCAGAGAGCAGGAGCATTTTCATTCACTTCAACCATGCCAAAAAAAGATTTAGAGAAGCGAACAGTTTCACCATATAGATTTCCACTTTTACGCACTGGATCCATGTCAGGTAGGCCTACAACACCCAAGAATAGTAGACCAACTACTCCAAACTCAAGCAGAAGACCCACCACATCAAGTCCTTCTGATGCAAGATTAATGTACCCTTCAGAGCCACGCAAATCAGCCTCAATGCGATTACCTGCCGAGAGAGACAGCAACAAAGATGTAGAACACCAACACCACAGTAAAAGTAAACGTCTCCTGAAGTCCTTGCTTAGCAGGCGCAAGTCTAAGAAGGATGACTTGCTATACACTTACTTAGATGAATACTAATTGATACAAACAATTGTCTATAGAATGAATGCAAGGGAAAGAGTTCATCTGGAAAGAGTTTTTCCTATTTCATTTTGACAGGCTGCACTTCTTTATTGCCTACTTATTCGTTCCCCGTTTGGTCCCTTTGTTAAATGTCCATTTCTTTGAAGTCTGGAATGAACATCTATATGGTAGTTATTTATTTGTTTGTTTGTTTTTGGTGCTTTATCGAAGTTATTTTTTGAGAATGAATAACATTGTTTTTTATTAAGTGAATTTGGCTTCACTTCACTCCTCCTTTCTTCATTAACT

Coding sequences of Glyma14g30050

Limit To All Plant Sequences

>Glyma14g30050.2   sequence type=CDS   gene model=Glyma14g30050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGATTGCAACGCAGCCTTTATCTCGAGAGGCTTCGAATTATGATGAAGTTTTCATGCAACAGAGCTTGCTCTTTGATGATAGTCTAAAGGATTTGAAAAATCTGAGAACACAATTATACTCAGCAGCTGAATATTTTGAACTCTCTTACGCCAATGATGACCAAAAACAAATAGTGATTGAAACATTGAAGGATTATGCCATCAAAGCTCTTATAAATTCGGTGGATCATTTAGGGTCTGTGACCTATAAGGTGAATGACTTGTTAGATGAAAAGATTGTTGAAGTTTCTGAAACACAGCTACGTTTATCATGTATTCAACAGAGAATAAGTACGTGCCATGCATTCATGGATCATGAGGGGCGTACCCAGCAATCATTGGTGATTGATGCTCCAAAATATCATAAACGTTATATTTTGCCAGCCGGGGAGACCTTGCGTGGTGCCAAGTTAACAAAATCAATATACATGGGATGCAGCCTAGATGATGAAGATGACTGGCATCACTTCAGAAATGCTGTTCGAGCTACGATACGAGAAACGCCAACATCTACAGAGAGCAAAGGGCGTTCCCCATCACCTTCTTTGCAACCTCAGAGAGCAGGAGCATTTTCATTCACTTCAACCATGCCAAAAAAAGATTTAGAGAAGCGAACAGTTTCACCATATAGATTTCCACTTTTACGCACTGGATCCATGTCAGGTAGGCCTACAACACCCAAGAATAGTAGACCAACTACTCCAAACTCAAGCAGAAGACCCACCACATCAAGTCCTTCTGATGCAAGATTAATGTACCCTTCAGAGCCACGCAAATCAGCCTCAATGCGATTACCTGCCGAGAGAGACAGCAACAAAGATGTAGAACACCAACACCACAGTAAAAGTAAACGTCTCCTGAAGTCCTTGCTTAGCAGGCGCAAGTCTAAGAAGGATGACTTGCTATACACTTACTTAGATGAATACTAA

>Glyma14g30050.3   sequence type=CDS   gene model=Glyma14g30050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGATTGCAACGCAGCCTTTATCTCGAGAGGCTTCGAATTATGATGAAGTTTTCATGCAACAGAGCTTGCTCTTTGATGATAGTCTAAAGGATTTGAAAAATCTGAGAACACAATTATACTCAGCAGCTGAATATTTTGAACTCTCTTACGCCAATGATGACCAAAAACAAATAGTGATTGAAACATTGAAGGATTATGCCATCAAAGCTCTTATAAATTCGGTGGATCATTTAGGGTCTGTGACCTATAAGGTGAATGACTTGTTAGATGAAAAGATTGTTGAAGTTTCTGAAACACAGCTACGTTTATCATGTATTCAACAGAGAATAAGTACGTGCCATGCATTCATGGATCATGAGGGGCGTACCCAGCAATCATTGGTGATTGATGCTCCAAAATATCATAAACGTTATATTTTGCCAGCCGGGGAGACCTTGCGTGGTGCCAAGTTAACAAAATCAATATACATGGGATGCAGCCTAGATGATGAAGATGACTGGCATCACTTCAGAAATGCTGTTCGAGCTACGATACGAGAAACGCCAACATCTACAGAGAGCAAAGGGCGTTCCCCATCACCTTCTTTGCAACCTCAGAGAGCAGGAGCATTTTCATTCACTTCAACCATGCCAAAAAAAGATTTAGAGAAGCGAACAGTTTCACCATATAGATTTCCACTTTTACGCACTGGATCCATGTCAGGTAGGCCTACAACACCCAAGAATAGTAGACCAACTACTCCAAACTCAAGCAGAAGACCCACCACATCAAGTCCTTCTGATGCAAGATTAATGTACCCTTCAGAGCCACGCAAATCAGCCTCAATGCGATTACCTGCCGAGAGAGACAGCAACAAAGATGTAGAACACCAACACCACAGTAAAAGTAAACGTCTCCTGAAGTCCTTGCTTAGCAGGCGCAAGTCTAAGAAGGATGACTTGCTATACACTTACTTAGATGAATACTAA

Predicted protein sequences of Glyma14g30050

Limit To All Plant Sequences

>Glyma14g30050.2   sequence type=predicted peptide   gene model=Glyma14g30050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKIATQPLSREASNYDEVFMQQSLLFDDSLKDLKNLRTQLYSAAEYFELSYANDDQKQIVIETLKDYAIKALINSVDHLGSVTYKVNDLLDEKIVEVSETQLRLSCIQQRISTCHAFMDHEGRTQQSLVIDAPKYHKRYILPAGETLRGAKLTKSIYMGCSLDDEDDWHHFRNAVRATIRETPTSTESKGRSPSPSLQPQRAGAFSFTSTMPKKDLEKRTVSPYRFPLLRTGSMSGRPTTPKNSRPTTPNSSRRPTTSSPSDARLMYPSEPRKSASMRLPAERDSNKDVEHQHHSKSKRLLKSLLSRRKSKKDDLLYTYLDEY*

>Glyma14g30050.3   sequence type=predicted peptide   gene model=Glyma14g30050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKIATQPLSREASNYDEVFMQQSLLFDDSLKDLKNLRTQLYSAAEYFELSYANDDQKQIVIETLKDYAIKALINSVDHLGSVTYKVNDLLDEKIVEVSETQLRLSCIQQRISTCHAFMDHEGRTQQSLVIDAPKYHKRYILPAGETLRGAKLTKSIYMGCSLDDEDDWHHFRNAVRATIRETPTSTESKGRSPSPSLQPQRAGAFSFTSTMPKKDLEKRTVSPYRFPLLRTGSMSGRPTTPKNSRPTTPNSSRRPTTSSPSDARLMYPSEPRKSASMRLPAERDSNKDVEHQHHSKSKRLLKSLLSRRKSKKDDLLYTYLDEY*

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