SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G53300 | AT | Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 10 | chr5:21632802-21633989 REVERSE LENGTH=148 | SoyBase | E_val: 2.00E-105 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0016881 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity | SoyBase | N/A | ISS |
| GO:0031625 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin protein ligase binding | SoyBase | N/A | ISS |
| KOG0417 | KOG | Ubiquitin-protein ligase | JGI | ISS | |
| KOG0426 | KOG | Ubiquitin-protein ligase | JGI | ISS | |
| PTHR24068 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00179 | PFAM | Ubiquitin-conjugating enzyme | JGI | ISS | |
| UniRef100_C6TAY6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TAY6_SOYBN | SoyBase | E_val: 8.00E-106 | ISS |
| UniRef100_J3UE53 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme n=1 Tax=Lycoris longituba RepID=J3UE53_9ASPA | SoyBase | E_val: 8.00E-104 | ISS |
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Glyma14g29120 not represented in the dataset |
Glyma14g29120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g124300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g29120.2 sequence type=transcript gene model=Glyma14g29120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AACAATAATTAATTATTAATTAATTAATTATAGAAGAATAACCCAAACCCAATCAATCACAGAGAAGAAGATCGATTCCGAAGCCCCACATACCATTTGTTATTCATATAAAAACTCGTTTTCCTTCTCCATTTCTCGTCGCACCTTTTCCTCTTCTCTCTCTTTCTCTCTTTCTAGTTCGTGTTCTTCGTCGCAAATCCGAAGTAGGATCTCTCTTGTTTTTTCTCTAGGTTTTTCGCGATGGCGTCGAAGCGAATTTTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCAACATCTTGCAGTGCCGGTCCTGTTCATGAAGATATGTTTCATTGGCAAGCTACAATTATGGGTCCTCCAGACAGTCCCTATGCTGGAGGTGTTTTCCTAGTGACTATTCATTTCCCTCCAGATTATCCCTTTAAGCCACCCAAGGTTGCATTCAGGACGAAGGTGTTCCACCCAAATATAAATAGCAATGGAAGCATTTGCCTTGATATATTGAAGGAGCAGTGGAGCCCTGCTCTAACCATTTCCAAGACAGACAGGAACAAGTACGAGTCAACTGCAAGAAGCTGGACCCAGAAATATGCCATGGGCTAATTGACATAGAGAAGAGAGCGATTTTTACTTTCAGTGTTTAGGCCAAACAGCCTTGTATGAATATTTGTGGTCTTCGATTAAGGCCCCTCCAGTTGAAGATGAATGGGGAAATATTTCTTCTGTTGTCTGTATTGCAGAATGCAAACGCTACTTTTAAAACAGTGAAATGTAAGCCCAATTAAAAAGTTTAAAATTTTAACCTTGTATTGACAGTATTGTCGAATATTTAGAGAATGATTGGTTTGCTCTGTTATTCTGTTTTAGTTAATAATTGTGATTTGTGAAGTACCCATCTCGATCTTGTATTAAGATTTTATAAATGAAATTCGTAAAACAGCCATTTTATTCAGCTTTTCTTGACAAAATCTTGAAAATAAAATGGAAATGAAGTAGTATTATTGTTATAGAGTATATAATTCAAATGGAAG >Glyma14g29120.3 sequence type=transcript gene model=Glyma14g29120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AACAATAATTAATTATTAATTAATTAATTATAGAAGAATAACCCAAACCCAATCAATCACAGAGAAGAAGATCGATTCCGAAGCCCCACATACCATTTGTTATTCATATAAAAACTCGTTTTCCTTCTCCATTTCTCGTCGCACCTTTTCCTCTTCTCTCTCTTTCTCTCTTTCTAGTTCGTGTTCTTCGTCGCAAATCCGAAGTAGGATCTCTCTTGTTTTTTCTCTAGGTTTTTCGCGATGGCGTCGAAGCGAATTTTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCAACATCTTGCAGTGCCGGTCCTGTTCATGAAGATATGTTTCATTGGCAAGCTACAATTATGGGTCCTCCAGACAGTCCCTATGCTGGAGGTGTTTTCCTAGTGACTATTCATTTCCCTCCAGATTATCCCTTTAAGCCACCCAAGGTTGCATTCAGGACGAAGGTGTTCCACCCAAATATAAATAGCAATGGAAGCATTTGCCTTGATATATTGAAGGAGCAGTGGAGCCCTGCTCTAACCATTTCCAAGGTAACCTGGTGCTTGGACAAACTGGCTCAATCGGTCTGTCCAGTGCAGGCTTCCCAACACTAGTATTAGTCTATATATGATGTTCTTGTGTCTTGAAGTTTGAATGTCATCCATTGATCCATATAAAGCTTGGTTGTTTTCATTGTTGAAGTTATGCTGGCTGATTTGCATGAAGTTTGTATTGATGTGATCAGTTTTGAACTGATCCCATGCAGGGGGTTTAGCTGAGTCCAAAATTTCTTCTTTAAACTATGTACTTTGACATCATTGTTTACTTTGTTTATATGTATTTGGCATCTTTAGGTGTTGCTCTCAATTTGTTCCCTGTTGACGGACCCAAATCCTGATGATCCTTTGGTCCCCGAAATTGCACACATGTACAAGACAGACAGGAACAAGTACGAGTCAACTGCAAGAAGCTGGACCCAGAAATATGCCATGGGCTAATTGACATAGAGAAGAGAGCGATTTTTACTTTCAGTGTTTAGGCCAAACAGCCTTGTATGAATATTTGTGGTCTTCGATTAAGGCCCCTCCAGTTGAAGATGAATGGGGAAATATTTCTTCTGTTGTCTGTATTGCAGAATGCAAACGCTACTTTTAAAACAGTGAAATGTAAGCCCAATTAAAAAGTTTAAAATTTTAACCTTGTATTGACAGTATTGTCGAATATTTAGAGAATGATTGGTTTGCTCTGTTATTCTGTTTTAGTTAATAATTGTGATTTGTGAAGTACCCATCTCGATCTTGTATTAAGATTTTATAAATGAAATTCGTAAAACAGCCATTTTATTCAGCTTTTCTTGACAAAATCTTGAAAATAAAATGGAAATGAAGTAGTATTATTGTTATAGAGTATATAATTCAAATGGAAG
>Glyma14g29120.1 sequence type=CDS gene model=Glyma14g29120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCGAAGCGAATTTTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCAACATCTTGCAGTGCCGGTCCTGTTCATGAAGATATGTTTCATTGGCAAGCTACAATTATGGGTCCTCCAGACAGTCCCTATGCTGGAGGTGTTTTCCTAGTGACTATTCATTTCCCTCCAGATTATCCCTTTAAGCCACCCAAGGTTGCATTCAGGACGAAGGTGTTCCACCCAAATATAAATAGCAATGGAAGCATTTGCCTTGATATATTGAAGGAGCAGTGGAGCCCTGCTCTAACCATTTCCAAGGTGTTGCTCTCAATTTGTTCCCTGTTGACGGACCCAAATCCTGATGATCCTTTGGTCCCCGAAATTGCACACATGTACAAGACAGACAGGAACAAGTACGAGTCAACTGCAAGAAGCTGGACCCAGAAATATGCCATGGGCTAA >Glyma14g29120.2 sequence type=CDS gene model=Glyma14g29120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCGAAGCGAATTTTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCAACATCTTGCAGTGCCGGTCCTGTTCATGAAGATATGTTTCATTGGCAAGCTACAATTATGGGTCCTCCAGACAGTCCCTATGCTGGAGGTGTTTTCCTAGTGACTATTCATTTCCCTCCAGATTATCCCTTTAAGCCACCCAAGGTTGCATTCAGGACGAAGGTGTTCCACCCAAATATAAATAGCAATGGAAGCATTTGCCTTGATATATTGAAGGAGCAGTGGAGCCCTGCTCTAACCATTTCCAAGACAGACAGGAACAAGTACGAGTCAACTGCAAGAAGCTGGACCCAGAAATATGCCATGGGCTAA >Glyma14g29120.3 sequence type=CDS gene model=Glyma14g29120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCGAAGCGAATTTTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCAACATCTTGCAGTGCCGGTCCTGTTCATGAAGATATGTTTCATTGGCAAGCTACAATTATGGGTCCTCCAGACAGTCCCTATGCTGGAGGTGTTTTCCTAGTGACTATTCATTTCCCTCCAGATTATCCCTTTAAGCCACCCAAGGTTGCATTCAGGACGAAGGTGTTCCACCCAAATATAAATAGCAATGGAAGCATTTGCCTTGATATATTGAAGGAGCAGTGGAGCCCTGCTCTAACCATTTCCAAGGTAACCTGGTGCTTGGACAAACTGGCTCAATCGGTCTGTCCAGTGCAGGCTTCCCAACACTAG
>Glyma14g29120.1 sequence type=predicted peptide gene model=Glyma14g29120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASKRILKELKDLQKDPPTSCSAGPVHEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTQKYAMG* >Glyma14g29120.2 sequence type=predicted peptide gene model=Glyma14g29120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASKRILKELKDLQKDPPTSCSAGPVHEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKTDRNKYESTARSWTQKYAMG* >Glyma14g29120.3 sequence type=predicted peptide gene model=Glyma14g29120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASKRILKELKDLQKDPPTSCSAGPVHEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVTWCLDKLAQSVCPVQASQH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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