Glyma14g28953 - SoyBase

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Report for Sequence Feature Glyma14g28953

Feature Type:	gene_model
Chromosome:	Gm14
Start:	35417343
stop:	35429183
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g28953

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53280	AT	Annotation by Michelle Graham. TAIR10: plastid division1 \| chr5:21607586-21609080 FORWARD LENGTH=272	SoyBase	E_val: 3.00E-83	ISS
GO:0010020	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast fission	SoyBase	N/A	ISS
GO:0009707	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast outer membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q9FK13	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plastid division protein PDV1 n=1 Tax=Arabidopsis thaliana RepID=PDV1_ARATH	SoyBase	E_val: 1.00E-80	ISS
UniRef100_UPI000233B6CE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B6CE related cluster n=1 Tax=unknown RepID=UPI000233B6CE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g28953

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g28953 not represented in the dataset	Glyma14g28953 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g28953 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g123700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g28953

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g28953

Limit To All Plant Sequences

>Glyma14g28953.2   sequence type=transcript   gene model=Glyma14g28953   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAGAAGAGCAATGGCTTAGATATGACAAGGCATAACACAACTACTGGCATTCCAAAAGTCAATTTGGACAACCAAAAAAGCTACGACAAAAACAACAACGATGTTGGAGGACAATATAGAAATAGGATTGAATGACGACAATCTGGGAAAAGAGTTTGAGCAAGTTGCCTTAGACGCAACAACCAAGACAAATGATGCCAATCTAACAAAGGATTCAAATCCAATCAACGAAAGTGGTGCTTCAACAAATAATGCCGAACTTGAGTCTGCAAGGGTTGAACCCAAATCTGTTGGGGAAAAGTTTGTTGATATTATCCCCTCAGTTGTTCGTCAAAAGAAACAGCAAAAGAATATAGGGAGGAGGGATGTCCCTAACTCTTCTTTTCCAGAGGTTGTTCAAAAGGATCTTCAAATCCTTGCAAACTTTTGGAATCAAGTGGAGAAGGATGAAATAGATATGGCAACAAAGAACAACGATGCAACCACATCAAACATCATCAAAGTAGTTCCAACCACTCGAAAGAGGACTTCCAGGAAAAATAAATAACTTTGTGCTAGGGATATAGTTGCTCCTCAATCTCCATTTTCCAGATTGTTGATGGAGGAAATCGAAGCGATTATGGAGAAAATTTGGGACCTCCACGACAAGCTCAGCGACGCCATTCACTCCATCTCCAGATCCCACTTTCTCACTTCCGTCAAAATCCTCAAAAACAACTCTCCACCGCACCTTCCCAACGCCGCCGCGGATGACCGCTCTTCCGGTTTCGTTTTCGTCAAGGACTTCAGGCCCGCCGACAACGACAGTGACGGCGACTCCGCCGTCCGCGAAGCCAAGAGCCTCAACGCCATCCGGTCCGCCCTCGAGAACCTCGAAGACCAGCTCGAGTTCTTCCATACTATACAAACCCAGCAGTGTGTTGAGAGAGATGCTGCAATTGCACGTTTAGAACAGAGCAGAATTGTTCTTGCAGTGAGGCTGGCAGAACACCGTGGTAAGAAGTATAAAGTCATTGAAGAAGCTCTTGCTTTTATTGGAGATGTACGTGATGCAGGCAGCCTTGTTGCACCTGATATTTTCTATGGACAACCAAACTGTTCTGCTGAGAATATAGCGACTGAGAAAGCAAAGAGATCTAATATTCTTATCAATATTTTTATCTCAAGTTTCAATTTTGTGAAGAGATCTCTTGGATTGGATCATATGGGTGGAATAGTGGGCAATGCTGCTTTGGTTGCAGTTAGCATGATAGCTTTGCTTCATTTACATCAGGTAACTAATCATGAGCAGCCATTTGGACAAGAAAATACTGTTCACAGAAACAGTACCATGAGAAGAACTAGATTGGTTGGTTCTTCATCCGAAGCCCATTCCAGTAATTTGGATGTATTGTTAGCCAGAGGTTAGGATTAAACTTCTATCTCGTGATGAAATGATGAGCAGGTTATTTTCAGTGTTCTCTTTTTTTTTTTCCTTTTTTGTGCTCTTGTTCCTTTTTATCCCTCGGTTATAAAGAAGGCATGAGACCTGGTGTTGTGAAGGGAGGATAGTCTAAAGCGGAGGCAAAGCTTAGTGTCACTTGTGCTAACTGCTAAGGCTCTTGAGCGCGTCTTCTTGGTTTTTGTTGCCACCAAAATTTTTGAAAGTGGCATTATAGTTGATCTGAAAAGGTGCAAGATGTAGTTTGTGTTTGCTGAATTCTTTGTTGAGGTGCAGGTGCTTGAAGTATTAGAGTTAGTTGAAAGTTAATACAAATGTATCTTCTTTCTGCTAGGTAGATTCCTGCGTAATTTTTGCCAACTTTTGTTGATGGAATGTGAATGTCCTATGCAAATATTTTGGTGTATTATTTTTGAAGTATTATGTGAATACTTTTACGTTGCAATGAAGGAAATATTTTGGTGTTACCTTTAAAGAAAGTGATTATGCGGTATTGTTGGTAACTT

Coding sequences of Glyma14g28953

Limit To All Plant Sequences

>Glyma14g28953.1   sequence type=CDS   gene model=Glyma14g28953   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATGGGATATGCAGATGGAGGAAATCGAAGCGATTATGGAGAAAATTTGGGACCTCCACGACAAGCTCAGCGACGCCATTCACTCCATCTCCAGATCCCACTTTCTCACTTCCGTCAAAATCCTCAAAAACAACTCTCCACCGCACCTTCCCAACGCCGCCGCGGATGACCGCTCTTCCGGTTTCGTTTTCGTCAAGGACTTCAGGCCCGCCGACAACGACAGTGACGGCGACTCCGCCGTCCGCGAAGCCAAGAGCCTCAACGCCATCCGGTCCGCCCTCGAGAACCTCGAAGACCAGCTCGAGTTCTTCCATACTATACAAACCCAGCAGTGTGTTGAGAGAGATGCTGCAATTGCACGTTTAGAACAGAGCAGAATTGTTCTTGCAGTGAGGCTGGCAGAACACCGTGGTAAGAAGTATAAAGTCATTGAAGAAGCTCTTGCTTTTATTGGAGATGTACGTGATGCAGGCAGCCTTGTTGCACCTGATATTTTCTATGGACAACCAAACTGTTCTGCTGAGAATATAGCGACTGAGAAAGCAAAGAGATCTAATATTCTTATCAATATTTTTATCTCAAGTTTCAATTTTGTGAAGAGATCTCTTGGATTGGATCATATGGGTGGAATAGTGGGCAATGCTGCTTTGGTTGCAGTTAGCATGATAGCTTTGCTTCATTTACATCAGGTAACTAATCATGAGCAGCCATTTGGACAAGAAAATACTGTTCACAGAAACAGTACCATGAGAAGAACTAGATTGGTTGGTTCTTCATCCGAAGCCCATTCCAGTAATTTGGATGTATTGTTAGCCAGAGGTTAG

>Glyma14g28953.2   sequence type=CDS   gene model=Glyma14g28953   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAATCGAAGCGATTATGGAGAAAATTTGGGACCTCCACGACAAGCTCAGCGACGCCATTCACTCCATCTCCAGATCCCACTTTCTCACTTCCGTCAAAATCCTCAAAAACAACTCTCCACCGCACCTTCCCAACGCCGCCGCGGATGACCGCTCTTCCGGTTTCGTTTTCGTCAAGGACTTCAGGCCCGCCGACAACGACAGTGACGGCGACTCCGCCGTCCGCGAAGCCAAGAGCCTCAACGCCATCCGGTCCGCCCTCGAGAACCTCGAAGACCAGCTCGAGTTCTTCCATACTATACAAACCCAGCAGTGTGTTGAGAGAGATGCTGCAATTGCACGTTTAGAACAGAGCAGAATTGTTCTTGCAGTGAGGCTGGCAGAACACCGTGGTAAGAAGTATAAAGTCATTGAAGAAGCTCTTGCTTTTATTGGAGATGTACGTGATGCAGGCAGCCTTGTTGCACCTGATATTTTCTATGGACAACCAAACTGTTCTGCTGAGAATATAGCGACTGAGAAAGCAAAGAGATCTAATATTCTTATCAATATTTTTATCTCAAGTTTCAATTTTGTGAAGAGATCTCTTGGATTGGATCATATGGGTGGAATAGTGGGCAATGCTGCTTTGGTTGCAGTTAGCATGATAGCTTTGCTTCATTTACATCAGGTAACTAATCATGAGCAGCCATTTGGACAAGAAAATACTGTTCACAGAAACAGTACCATGAGAAGAACTAGATTGGTTGGTTCTTCATCCGAAGCCCATTCCAGTAATTTGGATGTATTGTTAGCCAGAGGTTAG

Predicted protein sequences of Glyma14g28953

Limit To All Plant Sequences

>Glyma14g28953.1   sequence type=predicted peptide   gene model=Glyma14g28953   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKWDMQMEEIEAIMEKIWDLHDKLSDAIHSISRSHFLTSVKILKNNSPPHLPNAAADDRSSGFVFVKDFRPADNDSDGDSAVREAKSLNAIRSALENLEDQLEFFHTIQTQQCVERDAAIARLEQSRIVLAVRLAEHRGKKYKVIEEALAFIGDVRDAGSLVAPDIFYGQPNCSAENIATEKAKRSNILINIFISSFNFVKRSLGLDHMGGIVGNAALVAVSMIALLHLHQVTNHEQPFGQENTVHRNSTMRRTRLVGSSSEAHSSNLDVLLARG*

>Glyma14g28953.2   sequence type=predicted peptide   gene model=Glyma14g28953   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEIEAIMEKIWDLHDKLSDAIHSISRSHFLTSVKILKNNSPPHLPNAAADDRSSGFVFVKDFRPADNDSDGDSAVREAKSLNAIRSALENLEDQLEFFHTIQTQQCVERDAAIARLEQSRIVLAVRLAEHRGKKYKVIEEALAFIGDVRDAGSLVAPDIFYGQPNCSAENIATEKAKRSNILINIFISSFNFVKRSLGLDHMGGIVGNAALVAVSMIALLHLHQVTNHEQPFGQENTVHRNSTMRRTRLVGSSSEAHSSNLDVLLARG*

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