Glyma14g28477 - SoyBase

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Report for Sequence Feature Glyma14g28477

Feature Type:	gene_model
Chromosome:	Gm14
Start:	34965963
stop:	34972942
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g28477

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21370	AT	Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF218 (InterPro:IPR003848); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr1:7484250-7485451 FORWARD LENGTH=342	SoyBase	E_val: 1.00E-177	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4533	KOG	Uncharacterized conserved protein	JGI		ISS
PF02698	PFAM	DUF218 domain	JGI		ISS
UniRef100_Q01I58	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: H0315A08.13 protein n=2 Tax=Oryza sativa RepID=Q01I58_ORYSA	SoyBase	E_val: 3.00E-161	ISS
UniRef100_UPI000233ACB7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233ACB7 related cluster n=1 Tax=unknown RepID=UPI000233ACB7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g28477

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g28477 not represented in the dataset	Glyma14g28477 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g28477 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g123000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g28477

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g28477

Limit To All Plant Sequences

>Glyma14g28477.2   sequence type=transcript   gene model=Glyma14g28477   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCTATCGGAACGCACCCAGGTATCTTGGGTGGCTGGATCTTCCATTTGGGCCTCATGTTCCCTTTGCTATCAAACGCTCTCCATCTCGTAACTCCCAAGACCTTTCCACGCAGAGTGCTGCAATAACAAGTCCTTGCAATTTCACTCAACTCAACCAAGCCAAAACTTAGAATTTTCCATTACTTTTCCTTTAATTCTTATTATTATCTTGATTATTTTCTAAAATTCCAAGTGCAGATCCTTCAATTCAATTCTCTCTGCGAATCATTGGAACTTTCAAGCACCACATTTTCCCCACTCACTACTCCATGTGACCCCATTGATCACTTCTGTGATCCAATGATTCCGTTGCTTCGCTTCACTCTCTCCCAAATCATAGAAAAAACCCCATTACAATGAACAATTACCCTTTTGGATCCCAAGCCCCCAAGTCCTTTCCCGCATACCCAAAAACCGAATTCGACTTAGAATCAGGAACCGCCATAAAGCGAACCCGAAAGCCCAAAAATTCGCCCTTTCACCCTCTCAGAATGATTAAATCATTTGGGAACCGTTTTCATCACTTCTTCAAGCTTCACCCTCTAATGGGTCTCTTCCTAGCCTTGTGCTTTGTGCTCGCACTTGCCATGATTCTCTCTTTGTATGGCACCCAATATGGGGTGCAGAGTGGTGGTTATGTGAAATCTGACATGGGTTTTGATGATTACCCTTTTTCCAAGCTTCAGAACCTTGTGATGGTTGCTGGGCATTCCATTTACACTAGTAGTAGTTGTGGCAAAATTGAGAAGGAGGATTCTTGGTTTTTGGAGTCTTATCAGAAGAATCCAGGCCAAGCTGCCACTTTTGTGACACACATTCATGAGGGGATTGAGATTGTGGCAAGGGATGACTCTGCTTTGCTGCTCTTCAGTGGGGGAGAGACTCGGAGAGATGCTGGCCCCCGCAGCGAGGCTCAGAGTTACTGGGCTGTTGCGGATTCGAAAGGGTGGTTTGGTAAGGAAGAAAGTGTGAAATGGAGAGCACTTACAGAGGAGCATGCACGAGACAGCTTTGAAAACCTTCTATTTAGTGTTTGTCGATTCCGGGAGCTTACTGGCACCTATCCCCAAAATATAACTTTCGTGATGGAAAACCGAGTGGGAGCGTTGGAGAAATTGGCCAGCGATCAAGGGGAGAAACTGACAGATGTGATGTGACATTGCCCACATCAAGGACAATATGCGAGAGATGAAACAGATCAAAGAATTGATTTTGGAGTGCATGTAGAGCAAGAAAAAGGAAACCCGCATCGAAAAAAGGGAGAGTTCCACAGTGTTCTTGAAAGAAAGGACCAACATTTCAGAGCTGAAACATATGCTGTGCAAGATATTGAATGAAGAGGTGGTCCTCATTTGACTTAGCAAGACAAAAATAACATGGAGGGAAATGGGTCAGAATGTAGTGAAGCAGAGGCTAGTTCTTGGACAAGAAAGCTGGAACTACCCACCTTTGATGGAAGCATAGAGGAGAAAACTGATTCAAAGGGTAGCAATTTTGAGTGTGATGGTGACCCATCACAGTTCTTGAAATCAGAAAACAGAAGTAAAGAAGGTTCAGTTATCAAGAACCACACTCTTTGTGGTGGAGAAGAAAGCAAAAATGATGAAGCAAAGTTAGCAAGAGAAACAAAGATTGAAAAAGTTATGATGGACGAAGAAGTTGACCCATTGATAAAGAGGGAGACAGCCTACGAAAATACAGTGAAGAATGTGAGCTGCGAAGACAATTTTCTTGATAACCCAATAACGGAGTTGATCAAGAAGGAAGTTGAAGGTGGAGATGCAACCAAGCCTCATTGTCTTCAAGATTCAGATTTTCATAAAAAGATCGGTATGATGAAACAGAAATCATTGTTGGACCCAGATATGATCATGAAGGTGGTTGGAAAATCAATGGTGCTGGAATCTTGGAATTTCAACTTGCTAAGTGAGCCTTTTGCATTAAACTTTGTTGCATCTATGGCTGACAGCTCAACAATGGAGCTAAGGCAGAAGGAATGTACTGAGGCAGCATGGTGATTAAAGTTATATGGAGTCCACCCTTGTCCAACCCACCATTGAAGCTGCTAGACCTAAAGTTTGCATGTAGTGGCCAGTGGGTTCACAGTTGATCCCCCATGAGGGACACCAAAGAGGCACGTCCTGTT

Coding sequences of Glyma14g28477

Limit To All Plant Sequences

>Glyma14g28477.1   sequence type=CDS   gene model=Glyma14g28477   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAATTACCCTTTTGGATCCCAAGCCCCCAAGTCCTTTCCCGCATACCCAAAAACCGAATTCGACTTAGAATCAGGAACCGCCATAAAGCGAACCCGAAAGCCCAAAAATTCGCCCTTTCACCCTCTCAGAATGATTAAATCATTTGGGAACCGTTTTCATCACTTCTTCAAGCTTCACCCTCTAATGGGTCTCTTCCTAGCCTTGTGCTTTGTGCTCGCACTTGCCATGATTCTCTCTTTGTATGGCACCCAATATGGGGTGCAGAGTGGTGGTTATGTGAAATCTGACATGGGTTTTGATGATTACCCTTTTTCCAAGCTTCAGAACCTTGTGATGGTTGCTGGGCATTCCATTTACACTAGTAGTAGTTGTGGCAAAATTGAGAAGGAGGATTCTTGGTTTTTGGAGTCTTATCAGAAGAATCCAGGCCAAGCTGCCACTTTTGTGACACACATTCATGAGGGGATTGAGATTGTGGCAAGGGATGACTCTGCTTTGCTGCTCTTCAGTGGGGGAGAGACTCGGAGAGATGCTGGCCCCCGCAGCGAGGCTCAGAGTTACTGGGCTGTTGCGGATTCGAAAGGGTGGTTTGGTAAGGAAGAAAGTGTGAAATGGAGAGCACTTACAGAGGAGCATGCACGAGACAGCTTTGAAAACCTTCTATTTAGTGTTTGTCGATTCCGGGAGCTTACTGGCACCTATCCCCAAAATATAACTGTTGTAAGTTATGATTTCAAGGAAAAAAGATTTGCACATCTACACCGATCTGCTATCGGCTTTCCAGAATCAAGGTTCTTCTATACCGGCACTCCTGCTACATCAAATGCAAAAGCAACTGCTCTAAAAGGTGAGGAATTGGTCAGAACTCAATTCCAAAGAGATCCATTTGGATGTCGAGGTTCACTTTATCACAAGAAACTAAAGCGTGACCCTTTTCATCGGTCAATTCCTTATCCCAATGGGTGTCCTGAAATTGAAGGATTATTCAAATATTGTGGACCAACTCCTTATCCTGGTGCACTCCCGTGGGCACAGTAA

>Glyma14g28477.2   sequence type=CDS   gene model=Glyma14g28477   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAATTACCCTTTTGGATCCCAAGCCCCCAAGTCCTTTCCCGCATACCCAAAAACCGAATTCGACTTAGAATCAGGAACCGCCATAAAGCGAACCCGAAAGCCCAAAAATTCGCCCTTTCACCCTCTCAGAATGATTAAATCATTTGGGAACCGTTTTCATCACTTCTTCAAGCTTCACCCTCTAATGGGTCTCTTCCTAGCCTTGTGCTTTGTGCTCGCACTTGCCATGATTCTCTCTTTGTATGGCACCCAATATGGGGTGCAGAGTGGTGGTTATGTGAAATCTGACATGGGTTTTGATGATTACCCTTTTTCCAAGCTTCAGAACCTTGTGATGGTTGCTGGGCATTCCATTTACACTAGTAGTAGTTGTGGCAAAATTGAGAAGGAGGATTCTTGGTTTTTGGAGTCTTATCAGAAGAATCCAGGCCAAGCTGCCACTTTTGTGACACACATTCATGAGGGGATTGAGATTGTGGCAAGGGATGACTCTGCTTTGCTGCTCTTCAGTGGGGGAGAGACTCGGAGAGATGCTGGCCCCCGCAGCGAGGCTCAGAGTTACTGGGCTGTTGCGGATTCGAAAGGGTGGTTTGGTAAGGAAGAAAGTGTGAAATGGAGAGCACTTACAGAGGAGCATGCACGAGACAGCTTTGAAAACCTTCTATTTAGTGTTTGTCGATTCCGGGAGCTTACTGGCACCTATCCCCAAAATATAACTTTCGTGATGGAAAACCGAGTGGGAGCGTTGGAGAAATTGGCCAGCGATCAAGGGGAGAAACTGACAGATGTGATGTGA

Predicted protein sequences of Glyma14g28477

Limit To All Plant Sequences

>Glyma14g28477.1   sequence type=predicted peptide   gene model=Glyma14g28477   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNYPFGSQAPKSFPAYPKTEFDLESGTAIKRTRKPKNSPFHPLRMIKSFGNRFHHFFKLHPLMGLFLALCFVLALAMILSLYGTQYGVQSGGYVKSDMGFDDYPFSKLQNLVMVAGHSIYTSSSCGKIEKEDSWFLESYQKNPGQAATFVTHIHEGIEIVARDDSALLLFSGGETRRDAGPRSEAQSYWAVADSKGWFGKEESVKWRALTEEHARDSFENLLFSVCRFRELTGTYPQNITVVSYDFKEKRFAHLHRSAIGFPESRFFYTGTPATSNAKATALKGEELVRTQFQRDPFGCRGSLYHKKLKRDPFHRSIPYPNGCPEIEGLFKYCGPTPYPGALPWAQ*

>Glyma14g28477.2   sequence type=predicted peptide   gene model=Glyma14g28477   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNYPFGSQAPKSFPAYPKTEFDLESGTAIKRTRKPKNSPFHPLRMIKSFGNRFHHFFKLHPLMGLFLALCFVLALAMILSLYGTQYGVQSGGYVKSDMGFDDYPFSKLQNLVMVAGHSIYTSSSCGKIEKEDSWFLESYQKNPGQAATFVTHIHEGIEIVARDDSALLLFSGGETRRDAGPRSEAQSYWAVADSKGWFGKEESVKWRALTEEHARDSFENLLFSVCRFRELTGTYPQNITFVMENRVGALEKLASDQGEKLTDVM*

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