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Report for Sequence Feature Glyma14g28370

Feature Type:gene_model
Chromosome:Gm14
Start:34800400
stop:34803971
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g28370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77130AT Annotation by Michelle Graham. TAIR10: plant glycogenin-like starch initiation protein 2 | chr1:28979066-28981228 REVERSE LENGTH=618 SoyBaseE_val: 0ISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0009834GO-bp Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0015020GO-mf Annotation by Michelle Graham. GO Molecular Function: glucuronosyltransferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
KOG1950 KOG Glycosyl transferase, family 8 - glycogenin JGI ISS
PTHR11183Panther GLYCOGENIN JGI ISS
PTHR11183:SF7Panther GLYCOGENIN JGI ISS
PF01501PFAM Glycosyl transferase family 8 JGI ISS
UniRef100_B9SJI8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glycogenin, putative n=1 Tax=Ricinus communis RepID=B9SJI8_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233D91BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D91B related cluster n=1 Tax=unknown RepID=UPI000233D91B SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g28370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g28370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma14g28370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g28370
>Glyma14g28370.1   sequence type=CDS   gene model=Glyma14g28370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGGACCCTCCCCGAGCACCATCGAACCGCGTTACCGCTCCTCATCTTCCTTCAGTGAGGATACTGGCAAGAGAAGGTCTCAAAGAAGTAAAGATTTTAAAGATGTTGAGAAGGTGTTGCATATTCCATTCCAAGATAGGAGTATAACTTGCCGGCCTAATTGGAAACTAGTTTTGGTTATTATTGTATTGGGAACCTTAGTTACAATTTTTCATCCTCCAGCTGTTTATAATACTGATCATCTAAACTCTATATCACGGCCAACTATTATAAACAACTGGAAAGGAGGGTTTGATGGCATTGATTCACATTATACATCATTTCTAAATATCGAGTGGGACCAAATATCTAATGTTCTTGAAAATTTGAAGGATAGGGACACATATCATGGTGTTGGCTTATTAAACTTCAATGACAGTGAGATTGACCACTGGAAGAAGCTGATACCAGAGGCAGAGCATGTAGTCCTTCACCTGAACTATGCTTCAAGTAATATTACTTGGAATGTCCTGTATCCAGAATGGATAGACGAAGAAGAAGAATATGAGTTCCCTACCTGTCCAACACTACCTAGGATTCAGGTACCAGGAAAGCCTCGGCTTGATCTTATTGCTGTCAAGCTTCCCTGCAACAAGTCAGGGTGCTGGTTGAGAGATGTAGCTCGTTTGCACCTGCAGATTGAAGCTGCAAGACTGGCTGCCTCTTCCAAAGGAAATCATCCTGTGCATGTGCTTTTGGTCACTGATTGCTTCCCAATCCCTAATCTCTTTACTTGCAAGGAACTTATACAGCGTGAAGGGAATGCCTGGCTTTATGAACCCAACCTGAATACTCTGAGAGAGAAGCTGCAGCTGCCAATTGGTTCATGTGAACTGGCAGTTCCTTTGAAAGCTAAAGAAAATTTTTATTCAGAAAGGCCACACCGACAAGCTTATGCAACCATCCTGCACTCTGCACAGATGTATGTTTGTGGAGCCATTACTGCAGCTCAGAGTATTCGCATGTCTGGTTCAACACGAGATCTTGTGATTCTTGTTGATGAAACTATTAGTGAGTATCATAGAGGGGGCTTGGAGGCTGCTGGATGGAAGATCCATACAATCCAAAGAATCAGGAATCCAAAAGCAGAACCAGAGGCATATAACGAGTGGAACTACAGCAAATTCCGTCTCTGGCAGCTAACAGATTATGATAAAATCATTTTCATTGATGCTGACCTTCTTATACTCAGAAATATCGATTTCCTTTTTGAGATGTCCGAAATATCCGCCATAGGAAACAATGCTACGCTGTTCAACTCAGGTGTTATGGTGGTTGAACCATCAAATTGTACGTTTCAACTTCTTATGGATCACATCAACGAGATTGTCTCCTACAATGGTGGGGACCAGGGGTATCTGAATGAAATCTTTACATGGTGGCATCGGATTCCAAAACACATGAATTTCTTGAAGCACTTCTGGGAAGGTGATGAGGAAGAGAGAAAAGCAATGAAAACTCGTCTCTTTGGAGCTGATCCACCAATCCTTTATGTCATCCATTACCTGGGTAATAAGCCATGGCTTTGCTTCCGAGACTACGACTGCAACTGGAACGTGGACATACTGCAGGAGTTTGCAAGTAATGTGGCTCACGCAAGATGGTGGAAGGTGCATGATGCAATGCCAGAAAAGTTGCAAAATTTCTGTTTGCTTAGGTCCAAGCAGAAGGCTGCATTATAA
Predicted protein sequences of Glyma14g28370
>Glyma14g28370.1   sequence type=predicted peptide   gene model=Glyma14g28370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGPSPSTIEPRYRSSSSFSEDTGKRRSQRSKDFKDVEKVLHIPFQDRSITCRPNWKLVLVIIVLGTLVTIFHPPAVYNTDHLNSISRPTIINNWKGGFDGIDSHYTSFLNIEWDQISNVLENLKDRDTYHGVGLLNFNDSEIDHWKKLIPEAEHVVLHLNYASSNITWNVLYPEWIDEEEEYEFPTCPTLPRIQVPGKPRLDLIAVKLPCNKSGCWLRDVARLHLQIEAARLAASSKGNHPVHVLLVTDCFPIPNLFTCKELIQREGNAWLYEPNLNTLREKLQLPIGSCELAVPLKAKENFYSERPHRQAYATILHSAQMYVCGAITAAQSIRMSGSTRDLVILVDETISEYHRGGLEAAGWKIHTIQRIRNPKAEPEAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMSEISAIGNNATLFNSGVMVVEPSNCTFQLLMDHINEIVSYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEERKAMKTRLFGADPPILYVIHYLGNKPWLCFRDYDCNWNVDILQEFASNVAHARWWKVHDAMPEKLQNFCLLRSKQKAAL*






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