Glyma14g28370 - SoyBase

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Report for Sequence Feature Glyma14g28370

Feature Type:	gene_model
Chromosome:	Gm14
Start:	34800400
stop:	34803971
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g28370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77130	AT	Annotation by Michelle Graham. TAIR10: plant glycogenin-like starch initiation protein 2 \| chr1:28979066-28981228 REVERSE LENGTH=618	SoyBase	E_val: 0	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009834	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0015020	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucuronosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG1950	KOG	Glycosyl transferase, family 8 - glycogenin	JGI		ISS
PTHR11183	Panther	GLYCOGENIN	JGI		ISS
PTHR11183:SF7	Panther	GLYCOGENIN	JGI		ISS
PF01501	PFAM	Glycosyl transferase family 8	JGI		ISS
UniRef100_B9SJI8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycogenin, putative n=1 Tax=Ricinus communis RepID=B9SJI8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D91B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D91B related cluster n=1 Tax=unknown RepID=UPI000233D91B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g28370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g28370 not represented in the dataset	Glyma14g28370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g28370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma14g28370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g28370

Limit To All Plant Sequences

>Glyma14g28370.1   sequence type=CDS   gene model=Glyma14g28370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGGACCCTCCCCGAGCACCATCGAACCGCGTTACCGCTCCTCATCTTCCTTCAGTGAGGATACTGGCAAGAGAAGGTCTCAAAGAAGTAAAGATTTTAAAGATGTTGAGAAGGTGTTGCATATTCCATTCCAAGATAGGAGTATAACTTGCCGGCCTAATTGGAAACTAGTTTTGGTTATTATTGTATTGGGAACCTTAGTTACAATTTTTCATCCTCCAGCTGTTTATAATACTGATCATCTAAACTCTATATCACGGCCAACTATTATAAACAACTGGAAAGGAGGGTTTGATGGCATTGATTCACATTATACATCATTTCTAAATATCGAGTGGGACCAAATATCTAATGTTCTTGAAAATTTGAAGGATAGGGACACATATCATGGTGTTGGCTTATTAAACTTCAATGACAGTGAGATTGACCACTGGAAGAAGCTGATACCAGAGGCAGAGCATGTAGTCCTTCACCTGAACTATGCTTCAAGTAATATTACTTGGAATGTCCTGTATCCAGAATGGATAGACGAAGAAGAAGAATATGAGTTCCCTACCTGTCCAACACTACCTAGGATTCAGGTACCAGGAAAGCCTCGGCTTGATCTTATTGCTGTCAAGCTTCCCTGCAACAAGTCAGGGTGCTGGTTGAGAGATGTAGCTCGTTTGCACCTGCAGATTGAAGCTGCAAGACTGGCTGCCTCTTCCAAAGGAAATCATCCTGTGCATGTGCTTTTGGTCACTGATTGCTTCCCAATCCCTAATCTCTTTACTTGCAAGGAACTTATACAGCGTGAAGGGAATGCCTGGCTTTATGAACCCAACCTGAATACTCTGAGAGAGAAGCTGCAGCTGCCAATTGGTTCATGTGAACTGGCAGTTCCTTTGAAAGCTAAAGAAAATTTTTATTCAGAAAGGCCACACCGACAAGCTTATGCAACCATCCTGCACTCTGCACAGATGTATGTTTGTGGAGCCATTACTGCAGCTCAGAGTATTCGCATGTCTGGTTCAACACGAGATCTTGTGATTCTTGTTGATGAAACTATTAGTGAGTATCATAGAGGGGGCTTGGAGGCTGCTGGATGGAAGATCCATACAATCCAAAGAATCAGGAATCCAAAAGCAGAACCAGAGGCATATAACGAGTGGAACTACAGCAAATTCCGTCTCTGGCAGCTAACAGATTATGATAAAATCATTTTCATTGATGCTGACCTTCTTATACTCAGAAATATCGATTTCCTTTTTGAGATGTCCGAAATATCCGCCATAGGAAACAATGCTACGCTGTTCAACTCAGGTGTTATGGTGGTTGAACCATCAAATTGTACGTTTCAACTTCTTATGGATCACATCAACGAGATTGTCTCCTACAATGGTGGGGACCAGGGGTATCTGAATGAAATCTTTACATGGTGGCATCGGATTCCAAAACACATGAATTTCTTGAAGCACTTCTGGGAAGGTGATGAGGAAGAGAGAAAAGCAATGAAAACTCGTCTCTTTGGAGCTGATCCACCAATCCTTTATGTCATCCATTACCTGGGTAATAAGCCATGGCTTTGCTTCCGAGACTACGACTGCAACTGGAACGTGGACATACTGCAGGAGTTTGCAAGTAATGTGGCTCACGCAAGATGGTGGAAGGTGCATGATGCAATGCCAGAAAAGTTGCAAAATTTCTGTTTGCTTAGGTCCAAGCAGAAGGCTGCATTATAA

Predicted protein sequences of Glyma14g28370

Limit To All Plant Sequences

>Glyma14g28370.1   sequence type=predicted peptide   gene model=Glyma14g28370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGPSPSTIEPRYRSSSSFSEDTGKRRSQRSKDFKDVEKVLHIPFQDRSITCRPNWKLVLVIIVLGTLVTIFHPPAVYNTDHLNSISRPTIINNWKGGFDGIDSHYTSFLNIEWDQISNVLENLKDRDTYHGVGLLNFNDSEIDHWKKLIPEAEHVVLHLNYASSNITWNVLYPEWIDEEEEYEFPTCPTLPRIQVPGKPRLDLIAVKLPCNKSGCWLRDVARLHLQIEAARLAASSKGNHPVHVLLVTDCFPIPNLFTCKELIQREGNAWLYEPNLNTLREKLQLPIGSCELAVPLKAKENFYSERPHRQAYATILHSAQMYVCGAITAAQSIRMSGSTRDLVILVDETISEYHRGGLEAAGWKIHTIQRIRNPKAEPEAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMSEISAIGNNATLFNSGVMVVEPSNCTFQLLMDHINEIVSYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEERKAMKTRLFGADPPILYVIHYLGNKPWLCFRDYDCNWNVDILQEFASNVAHARWWKVHDAMPEKLQNFCLLRSKQKAAL*

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