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Report for Sequence Feature Glyma14g28035

Feature Type:gene_model
Chromosome:Gm14
Start:34373648
stop:34377981
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g28035
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G22260AT Annotation by Michelle Graham. TAIR10: Myosin heavy chain-related protein | chr1:7860160-7865142 REVERSE LENGTH=871 SoyBaseE_val: 2.00E-67ISS
GO:0007129GO-bp Annotation by Michelle Graham. GO Biological Process: synapsis SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0000795GO-cc Annotation by Michelle Graham. GO Cellular Compartment: synaptonemal complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PTHR11361Panther DNA MISMATCH REPAIR MUTS RELATED PROTEINS JGI ISS
PTHR11361:SF36Panther MUTS HOMOLOG 4, MSH4 JGI ISS
PF00488PFAM MutS domain V JGI ISS
UniRef100_G7KB78UniRef Annotation by Michelle Graham. Most informative UniRef hit: Synaptonemal complex protein n=1 Tax=Medicago truncatula RepID=G7KB78_MEDTR SoyBaseE_val: 8.00E-97ISS
UniRef100_UPI000233B6BDUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B6BD related cluster n=1 Tax=unknown RepID=UPI000233B6BD SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g28035
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g28035 not represented in the dataset
Glyma14g28035 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g28035 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g121700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g28035
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g28035
>Glyma14g28035.1   sequence type=CDS   gene model=Glyma14g28035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGTAAATTCATTTGCTCATATGATATCAACTAAGCCTGTTGATCGATATACAAGACCAGAATTTACAGAGAATGGGCCGTTGGCAATTGATTTTGGTAGACACCCAATCCTGGAGAGCATACACAATGACTTTGTTGCCAATAATATATTTCTGACTGAAGCCTCGAATATGGCGATTGTGATGGGCCCCAATATGAGTGGAAAGAGTACTTACCTTCAACAAGTGTGTCTCATAGTTATTCTTGCTCAAGTTGGGTGTTATGTTCCAGAAAAATGTCTTTTAAGACAATTCTGCATGATGGAGACAAGGAATCTATCATTATTGACTGCTGCTAAAAGCAAACTTTCAGAGGCTAAAAAGCAATATGATCAAATGGTAGAGAATAAACAGTTAGAACTATCAAGGCATTTGAAAGAAATATCTCAGAGAAATGATCAGGCTATTAATCATATTAAGAGGAAGTATGAGTTGGAGAATATGGAAATTGTGAACAAGGAAAAAGAAAAGGTTCGATATGATTTCCTGGCTGACAAAGCCATTGCAGAAATTGAGGCAAAGTGTGGCCAAAAAATTGAAGAATGCAAAGAAGAACAAAGGCAGCAGTTGATGCGCATTCAAGATGAACACACATTGCTCGTTACTCAAATGAAGCAGGAGCATGACAAGAGGCAAGCAAGCCTCATAGCTGAACACAACGAACAGCTAAAGCGTACCCAACTGCAAGCTGAAAATGAATTGAGAGAGAAAACAATGTTTATGAGGAATGATCATGAAGCTCAGATCAAAGCATTGAGGTGTGAACTTGAAGATGAGTGTCAGAAGCTGGAAGAGGAGTTGCATCTTCAAAAATCCAAAGAAGACAGGCAAAGGGCTTTGTTGCAGTTGCAGTGGAAAGTGATGAGTGACAAGCCCAAAGAGGACCAAGAAGTGAATTCAAAACAGGTTGACTTGTGTTTCAATCTATTTGTCTGTGTCTGTCTTCAAATGGATGCCATATTTGCTAATTTTCATGTTGGGATACCTTTGGTAGTTTGGTTTGACATATTACATTTATCATTTGGTAGGCACAGTTGGGGAAATGAGAAGACATTTCTTGTATACCTAAATGTGCTTCTTTAA
Predicted protein sequences of Glyma14g28035
>Glyma14g28035.1   sequence type=predicted peptide   gene model=Glyma14g28035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIVNSFAHMISTKPVDRYTRPEFTENGPLAIDFGRHPILESIHNDFVANNIFLTEASNMAIVMGPNMSGKSTYLQQVCLIVILAQVGCYVPEKCLLRQFCMMETRNLSLLTAAKSKLSEAKKQYDQMVENKQLELSRHLKEISQRNDQAINHIKRKYELENMEIVNKEKEKVRYDFLADKAIAEIEAKCGQKIEECKEEQRQQLMRIQDEHTLLVTQMKQEHDKRQASLIAEHNEQLKRTQLQAENELREKTMFMRNDHEAQIKALRCELEDECQKLEEELHLQKSKEDRQRALLQLQWKVMSDKPKEDQEVNSKQVDLCFNLFVCVCLQMDAIFANFHVGIPLVVWFDILHLSFGRHSWGNEKTFLVYLNVLL*






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