SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G10180 | AT | Annotation by Michelle Graham. TAIR10: light-mediated development protein 1 / deetiolated1 (DET1) | chr4:6346543-6349146 FORWARD LENGTH=543 | SoyBase | E_val: 0 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0010100 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of photomorphogenesis | SoyBase | N/A | ISS |
| GO:0048608 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reproductive structure development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| KOG2558 | KOG | Negative regulator of histones | JGI | ISS | |
| PTHR13374 | Panther | DET1 HOMOLOG (DE-ETIOLATED-1 HOMOLOG) | JGI | ISS | |
| PF09737 | PFAM | De-etiolated protein 1 Det1 | JGI | ISS | |
| UniRef100_G7K971 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Light-mediated development protein DET1 n=2 Tax=Medicago truncatula RepID=G7K971_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B6BC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B6BC related cluster n=1 Tax=unknown RepID=UPI000233B6BC | SoyBase | E_val: 0 | ISS |
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Glyma14g28021 not represented in the dataset |
Glyma14g28021 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g121600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g28021.1 sequence type=CDS gene model=Glyma14g28021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGTCAACGAACACAACCGCGGATGGTACAAATAATCCAGCCACTCCTAAGTGGATTGAAGTCAAGGTTCATCATGCTCGGCGATTCTATGAAAATTTGGTACCAAGTTACACAGTATATGAGGTTGAGTGCCCAGACCATTCATTTCGTAAATTCACTGATGATGGCCAATACCTTATAAGTTTCAGCAGAAATCATCAGGAGTTGATTGTTTATAGGCCTAGATGGCTTTCTTTTTCATGCAAAGATGAAGATTGTGATAAACATGATTTGCCATCAAGAGCAAAGAGATTTGACAGTTTTTTCACCCAATTATATTGTGTAGCACTTGCTTCTTGCAATGAACTTATATGTAAAGATTTCTTTCTTTACATGGAGAGTAATCAATTTGGACTGTTTTCTACTTCAACGGCTCAAATTCATGATGCTCCTGCTGTTGGAGGAGTTGTCCAAGGTGTTCCTTCAATTGAGAAGATAACTTTCCACCTCTTGAGACTGGAAGATGGAGAGATCTTGGACAAGAAGGTCTTCAGTAATGACTTCGTTAATTTAACCCATAATATGGGTGTCTTCTTGTATGATGACCTATTGGCAATTGTATCACTTCGCTATCAAACTATACACATTCTTCAAATTAGAGACTCTAGGAACCTTGTTGATGTACGTGCTATTGGGGAATTCTGCCGCGAAGATGATGAGCTTTTTCTCAATTCAAATGCTCAGGGCATGGCATTGTCTGACAAAAATAAACAGCTTCAATTGCCTGGGAACCACATTGAAAATCACCTGCATCAAGGCCAGCCTAATCTGGGGAATTCTTTTCTAAGTGGTATAAAACAGCGATTGCTTTCATTCATATTCCAGGGACTATGGAATGAAGAAAGAGATGATACCTTGAGGATCCAAAGGCTCAGGAAGAAATTTTACTTCCACTTTCAAGATTATGTTGATTTGATTATCTGGAAGGTGCAATTCTTGGACCGACACCATTTGCTAATCAAGTTTGGTAGTGTAGATGGAGGGGTGTCCCGAAATGCTGATCACCACCCAACTTTTGTTGTTGTATATAACATGGATACAACTGAAATTGTATCATTTTATCAGAATTCACCAGACGAGCTTTATCTGTTGTTTGAGCAGTTCTGTGACCACTTCCATGCAACATCAAGGAATTCAATGTATATGAATTTCATATCATCTCATTCAAATAATATCCACGCACTGGAACAACTCTGGAGCATTAAAGATAAGGCAAGCAGCTCTGCACAGGGGAGGTTATTGATGAAGATGTACTTCATGCACGTGTTCCTTTTGTTGCCTGCACTCAACAATGCTTTGCTGTTAAGGCTGGAATTGATGGCCTCTTGGATATTTCACGAAGAGCATTTTGTGAAACCAGTGAAGGTTTTATAA
>Glyma14g28021.1 sequence type=predicted peptide gene model=Glyma14g28021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSTNTTADGTNNPATPKWIEVKVHHARRFYENLVPSYTVYEVECPDHSFRKFTDDGQYLISFSRNHQELIVYRPRWLSFSCKDEDCDKHDLPSRAKRFDSFFTQLYCVALASCNELICKDFFLYMESNQFGLFSTSTAQIHDAPAVGGVVQGVPSIEKITFHLLRLEDGEILDKKVFSNDFVNLTHNMGVFLYDDLLAIVSLRYQTIHILQIRDSRNLVDVRAIGEFCREDDELFLNSNAQGMALSDKNKQLQLPGNHIENHLHQGQPNLGNSFLSGIKQRLLSFIFQGLWNEERDDTLRIQRLRKKFYFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNADHHPTFVVVYNMDTTEIVSFYQNSPDELYLLFEQFCDHFHATSRNSMYMNFISSHSNNIHALEQLWSIKDKASSSAQGRLLMKMYFMHVFLLLPALNNALLLRLELMASWIFHEEHFVKPVKVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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