SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma14g28021

Feature Type:gene_model
Chromosome:Gm14
Start:34365931
stop:34371668
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g28021
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G10180AT Annotation by Michelle Graham. TAIR10: light-mediated development protein 1 / deetiolated1 (DET1) | chr4:6346543-6349146 FORWARD LENGTH=543 SoyBaseE_val: 0ISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0010100GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of photomorphogenesis SoyBaseN/AISS
GO:0048608GO-bp Annotation by Michelle Graham. GO Biological Process: reproductive structure development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
KOG2558 KOG Negative regulator of histones JGI ISS
PTHR13374Panther DET1 HOMOLOG (DE-ETIOLATED-1 HOMOLOG) JGI ISS
PF09737PFAM De-etiolated protein 1 Det1 JGI ISS
UniRef100_G7K971UniRef Annotation by Michelle Graham. Most informative UniRef hit: Light-mediated development protein DET1 n=2 Tax=Medicago truncatula RepID=G7K971_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233B6BCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B6BC related cluster n=1 Tax=unknown RepID=UPI000233B6BC SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g28021
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g28021 not represented in the dataset
Glyma14g28021 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g28021 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g121600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g28021
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g28021
>Glyma14g28021.1   sequence type=CDS   gene model=Glyma14g28021   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTCAACGAACACAACCGCGGATGGTACAAATAATCCAGCCACTCCTAAGTGGATTGAAGTCAAGGTTCATCATGCTCGGCGATTCTATGAAAATTTGGTACCAAGTTACACAGTATATGAGGTTGAGTGCCCAGACCATTCATTTCGTAAATTCACTGATGATGGCCAATACCTTATAAGTTTCAGCAGAAATCATCAGGAGTTGATTGTTTATAGGCCTAGATGGCTTTCTTTTTCATGCAAAGATGAAGATTGTGATAAACATGATTTGCCATCAAGAGCAAAGAGATTTGACAGTTTTTTCACCCAATTATATTGTGTAGCACTTGCTTCTTGCAATGAACTTATATGTAAAGATTTCTTTCTTTACATGGAGAGTAATCAATTTGGACTGTTTTCTACTTCAACGGCTCAAATTCATGATGCTCCTGCTGTTGGAGGAGTTGTCCAAGGTGTTCCTTCAATTGAGAAGATAACTTTCCACCTCTTGAGACTGGAAGATGGAGAGATCTTGGACAAGAAGGTCTTCAGTAATGACTTCGTTAATTTAACCCATAATATGGGTGTCTTCTTGTATGATGACCTATTGGCAATTGTATCACTTCGCTATCAAACTATACACATTCTTCAAATTAGAGACTCTAGGAACCTTGTTGATGTACGTGCTATTGGGGAATTCTGCCGCGAAGATGATGAGCTTTTTCTCAATTCAAATGCTCAGGGCATGGCATTGTCTGACAAAAATAAACAGCTTCAATTGCCTGGGAACCACATTGAAAATCACCTGCATCAAGGCCAGCCTAATCTGGGGAATTCTTTTCTAAGTGGTATAAAACAGCGATTGCTTTCATTCATATTCCAGGGACTATGGAATGAAGAAAGAGATGATACCTTGAGGATCCAAAGGCTCAGGAAGAAATTTTACTTCCACTTTCAAGATTATGTTGATTTGATTATCTGGAAGGTGCAATTCTTGGACCGACACCATTTGCTAATCAAGTTTGGTAGTGTAGATGGAGGGGTGTCCCGAAATGCTGATCACCACCCAACTTTTGTTGTTGTATATAACATGGATACAACTGAAATTGTATCATTTTATCAGAATTCACCAGACGAGCTTTATCTGTTGTTTGAGCAGTTCTGTGACCACTTCCATGCAACATCAAGGAATTCAATGTATATGAATTTCATATCATCTCATTCAAATAATATCCACGCACTGGAACAACTCTGGAGCATTAAAGATAAGGCAAGCAGCTCTGCACAGGGGAGGTTATTGATGAAGATGTACTTCATGCACGTGTTCCTTTTGTTGCCTGCACTCAACAATGCTTTGCTGTTAAGGCTGGAATTGATGGCCTCTTGGATATTTCACGAAGAGCATTTTGTGAAACCAGTGAAGGTTTTATAA
Predicted protein sequences of Glyma14g28021
>Glyma14g28021.1   sequence type=predicted peptide   gene model=Glyma14g28021   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSTNTTADGTNNPATPKWIEVKVHHARRFYENLVPSYTVYEVECPDHSFRKFTDDGQYLISFSRNHQELIVYRPRWLSFSCKDEDCDKHDLPSRAKRFDSFFTQLYCVALASCNELICKDFFLYMESNQFGLFSTSTAQIHDAPAVGGVVQGVPSIEKITFHLLRLEDGEILDKKVFSNDFVNLTHNMGVFLYDDLLAIVSLRYQTIHILQIRDSRNLVDVRAIGEFCREDDELFLNSNAQGMALSDKNKQLQLPGNHIENHLHQGQPNLGNSFLSGIKQRLLSFIFQGLWNEERDDTLRIQRLRKKFYFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNADHHPTFVVVYNMDTTEIVSFYQNSPDELYLLFEQFCDHFHATSRNSMYMNFISSHSNNIHALEQLWSIKDKASSSAQGRLLMKMYFMHVFLLLPALNNALLLRLELMASWIFHEEHFVKPVKVL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo