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Report for Sequence Feature Glyma14g27990

Feature Type:gene_model
Chromosome:Gm14
Start:34322853
stop:34325575
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g27990
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G43800AT Annotation by Michelle Graham. TAIR10: Plant stearoyl-acyl-carrier-protein desaturase family protein | chr1:16577662-16579549 FORWARD LENGTH=391 SoyBaseE_val: 0ISS
GO:0001666GO-bp Annotation by Michelle Graham. GO Biological Process: response to hypoxia SoyBaseN/AISS
GO:0006631GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process SoyBaseN/AISS
GO:0006633GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0010089GO-bp Annotation by Michelle Graham. GO Biological Process: xylem development SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0044036GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0045300GO-mf Annotation by Michelle Graham. GO Molecular Function: acyl-[acyl-carrier-protein] desaturase activity SoyBaseN/AISS
GO:0046914GO-mf Annotation by Michelle Graham. GO Molecular Function: transition metal ion binding SoyBaseN/AISS
PF03405PFAM Fatty acid desaturase JGI ISS
UniRef100_A1YNA0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Acyl-[acyl-carrier-protein] desaturase n=2 Tax=Glycine max RepID=A1YNA0_SOYBN SoyBaseE_val: 0ISS
UniRef100_A1YNA0UniRef Annotation by Michelle Graham. Best UniRef hit: Acyl-[acyl-carrier-protein] desaturase n=2 Tax=Glycine max RepID=A1YNA0_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma14g27990
LocusGene SymbolProtein Name
SACPD-C stearoyl-acyl carrier protein desaturase

Expression Patterns of Glyma14g27990
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g27990 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g121400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g27990
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g27990
>Glyma14g27990.1   sequence type=CDS   gene model=Glyma14g27990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCCAGAAAAGAAAGAAATTTTCAAGTCCTTGGAGGGATGGGCCTCGGAGTGGGTCCTACCGCTGCTGAAGCCCGTGGAGCAATGCTGGCAGCCACAAAACTTCCTCCCTGACCCCTCCCTTCCGCATGAAGAGTTCAGCCATCAGGTGAAGGAGCTTCGCGAACGCACTAAAGAGTTACCTGATGAGTACTTTGTGGTGCTGGTGGGTGATATGGTCACCGAGGACGCGCTTCCCACTTACCAGACCATGATCAACAACCTTGATGGAGTGAAAGATGACAGCGGCACGAGCCCGAGCCCGTGGGCCGTGTGGACCCGGGCCTGGACCGCCGAGGAAAACAGACACGGGGATCTGCTCAGAACTTATTTGTATCTCTCTGGGAGGGTTGACATGGCTAAGGTCGAAAAGACCGTACATTACCTCATTTCAGCTGGCATGGACCCTGGGACAGACAACAACCCATATTTGGGGTTTGTGTACACGTCATTCCAAGAGCGAGCAACATTTGTGGCGCACGGGAACACGGCTCGGCTCGCGAAGGAGGGCGGGGATCCAGTGCTGGCGCGCCTATGCGGGACCATCGCAGCGGACGAGAAGCGGCACGAGAACGCGTACTCAAGAATCGTGGAGAAGCTTCTGGAAGTGGACCCCACCGGGGCAATGGTGGCCATAGGGAACATGATGGAGAAGAAGATCACGATGCCGGCGCACCTTATGTACGATGGGGATGACCCCAGGCTATTCGAGCACTACTCCGCTGTGGCGCAGCGCATAGGCGTGTACACCGCCAACGACTACGCAGACATCTTGGAGTTTCTCGTTGAACGGTGGAGATTGGAGAAGCTTGAAGGATTGATGGCTGAGGGGAAGCGGGCGCAGGATTTCGTGTGTGGGTTGGCGCCGAGGATTAGGAGGTTGCAAGAGCGCGCTGATGAGCGAGCGCGTAAGATGAAGAAGCATCATGGCGTTAAGTTCAGTTGGATTTTCAATAAAGAATTGCTTTTGTGA
Predicted protein sequences of Glyma14g27990
>Glyma14g27990.1   sequence type=predicted peptide   gene model=Glyma14g27990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPEKKEIFKSLEGWASEWVLPLLKPVEQCWQPQNFLPDPSLPHEEFSHQVKELRERTKELPDEYFVVLVGDMVTEDALPTYQTMINNLDGVKDDSGTSPSPWAVWTRAWTAEENRHGDLLRTYLYLSGRVDMAKVEKTVHYLISAGMDPGTDNNPYLGFVYTSFQERATFVAHGNTARLAKEGGDPVLARLCGTIAADEKRHENAYSRIVEKLLEVDPTGAMVAIGNMMEKKITMPAHLMYDGDDPRLFEHYSAVAQRIGVYTANDYADILEFLVERWRLEKLEGLMAEGKRAQDFVCGLAPRIRRLQERADERARKMKKHHGVKFSWIFNKELLL*






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