|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G03940 | AT | Annotation by Michelle Graham. TAIR10: chloroplast signal recognition particle 54 kDa subunit | chr5:1060265-1063257 REVERSE LENGTH=564 | SoyBase | E_val: 1.00E-44 | ISS |
GO:0006614 | GO-bp | Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane | SoyBase | N/A | ISS |
GO:0006617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | SoyBase | N/A | ISS |
GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
GO:0045038 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into chloroplast thylakoid membrane | SoyBase | N/A | ISS |
GO:0051607 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to virus | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0005786 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle, endoplasmic reticulum targeting | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
GO:0048500 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle | SoyBase | N/A | ISS |
GO:0080085 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle, chloroplast targeting | SoyBase | N/A | ISS |
GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
GO:0003729 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mRNA binding | SoyBase | N/A | ISS |
GO:0005048 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: signal sequence binding | SoyBase | N/A | ISS |
GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
GO:0008312 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 7S RNA binding | SoyBase | N/A | ISS |
GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
PTHR11564 | Panther | GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS | JGI | ISS | |
PTHR11564:SF7 | Panther | SIGNAL RECOGNITION PARTICLE PROTEIN | JGI | ISS | |
PF00448 | PFAM | SRP54-type protein, GTPase domain | JGI | ISS | |
UniRef100_A2Q2E1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: GTP-binding signal recognition particle SRP54, G-domain n=1 Tax=Medicago truncatula RepID=A2Q2E1_MEDTR | SoyBase | E_val: 2.00E-49 | ISS |
UniRef100_A2Q2E1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding signal recognition particle SRP54, G-domain n=1 Tax=Medicago truncatula RepID=A2Q2E1_MEDTR | SoyBase | E_val: 2.00E-49 | ISS |
Glyma14g27920 not represented in the dataset |
Glyma14g27920 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.14g121000 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g27920.1 sequence type=CDS gene model=Glyma14g27920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTGGCAAATTATCTCAAGAAACAAGGAAAAAGTTGCATGCTAGTTGCTGGGGATGTTTACAAACCTGCTGCTATTGACCAGCTTGCTATTTTGGGAAAACATGTGGATGTGCCTGTCTATACAGCAGGTACTGATGTTAAACCTTCAGAAATTGCCAAACAAGGTTTAGAAGAGGCAAAAAAGAAGAAAATTGATGTTGTTATTCATAAATTAAAATGCAAAGCGGAAAGTAAAAGAGTAGAGAAGAAGGAGACAAACACACAAGAGTTTTTATACTGGTTCGGCAACAACCCGTGCCTACATCCAGTCCCCAAGCGACCTGCGGTCCTTGAGATTTCTTTCAACCTTGTAAAAATTATTTTACAAGCAAAGATCCACAAGGGATCGTTGGTGACTACTTTCAATCCTGAGATTGGAATAACAGGTGCCATCTTGACAAAGCTTGATGCCGATTCAAGGGGTGGAGCAGCTTTGAGTTTCAGAGAGAGATCATTAAGAACCCCATTTGATGGTGCAGGATGCAACCAAGAACCCTCACAGCTTTCGGCGCTCTTCTCTTTTTTAATTCATCCACTTCCATACAAAGACGGTGTTACTCAAACCTGTCTTAAAATTAGTTGTTCAGGACGGTTATTACAGCACCGTAGTAGAAAACTGAATGACATTTATTTTATAAAATAA
>Glyma14g27920.1 sequence type=predicted peptide gene model=Glyma14g27920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high LANYLKKQGKSCMLVAGDVYKPAAIDQLAILGKHVDVPVYTAGTDVKPSEIAKQGLEEAKKKKIDVVIHKLKCKAESKRVEKKETNTQEFLYWFGNNPCLHPVPKRPAVLEISFNLVKIILQAKIHKGSLVTTFNPEIGITGAILTKLDADSRGGAALSFRERSLRTPFDGAGCNQEPSQLSALFSFLIHPLPYKDGVTQTCLKISCSGRLLQHRSRKLNDIYFIK*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||