Glyma14g27900 - SoyBase

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Report for Sequence Feature Glyma14g27900

Feature Type:	gene_model
Chromosome:	Gm14
Start:	34223606
stop:	34238214
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g27900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77110	AT	Annotation by Michelle Graham. TAIR10: Auxin efflux carrier family protein \| chr1:28970855-28974408 FORWARD LENGTH=570	SoyBase	E_val: 0	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010073	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem maintenance	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0009672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: auxin:hydrogen symporter activity	SoyBase	N/A	ISS
PF03547	PFAM	Membrane transport protein	JGI		ISS
UniRef100_E5KGD8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin efflux facilitator SlPIN6 n=1 Tax=Solanum lycopersicum RepID=E5KGD8_SOLLC	SoyBase	E_val: 0	ISS
UniRef100_I1MAE5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAE5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g27900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g27900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g120900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g27900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g27900

Limit To All Plant Sequences

>Glyma14g27900.1   sequence type=CDS   gene model=Glyma14g27900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCACAGGGGAGGATTTGTACAAGGTGATGTGCGCGATGGTGCCACTATACTTCGCAATGCTGGTGGCCTACGGCTCAGTCAAGTGGTGCAAGATGTTCACCCCGGACCAATGCTCCGGCATCAACCGCTTCGTGGCGGTGTTCGCAGTTCCGGTGCTCTCCTTCCACTTCATCTCCATGAACAACCCTTATCAGATGGACGCCAGGTTCATCGTGGCGGACACGCTCTCGAAGCTCGTTGTGCTTCTATTTCTGTCCCTCTGGGCAATTTTCTTCCCCGGAGGCTCTTTGGACTGGCTCATCACTCTCTTCTCGCTCGCCACCTTGCCCAACACACTTGTCATGGGTATCCCGCTGCTCCAAGCCATGTACGGCGACTTCACGCAATCGCTTATGGTGCAACTCGTCGTGCTCCAGTGCATCATATGGTACACTCTACTCCTCTTCTTGTTCGAGTACAGAGCGGCGACGGTTCTGATCCAACGGCAGTTCCCGGGGCCAACGGCGGCGTCCATAGCGAAGTTCGAGGTCGACGGCGATGTGATATCGCTCGACGGCCACGACATGCCGCTGCGGACGGAGTCGGAGACCGACGACCAGGGCCGGATCCGAGTGCGGATCCGCCGCTCGGTCTCATCGGTGCCGGAGACGAACTCCTCTATCGGCGGCAACACTGCCGTTGTCACGCCGCGGCCGTCCAACCTCTCGAACGCGGACATATTCTCGATCAACACGCCGCTTCACCTGCACGACGGCGGCGGGGACTTTGCCGCCGGCGCCAGTCCCCACCTCTCCGGCTACGCCTCGTCCGACGCGTACTCGCTGCAGCCCACGCCGAGGGCGTCGAACTTCAACGAGATGGAGGCCAGCACGCCGGTGTGGGGGAGGTCGCCGGTCTCCGCCGGGAGAGGGTGCCAACAGTCATCGCCGGTGGCCAGAGTGGTGTGGGGGTCGCCGGGGAAATGCCTGGGAGTTGAGAGACAAGGCTGCAAGGACATAATGTCAGATAAAGAAATCAGCTTCAGAGACAGCACCAAAGTCTCAAAGCCTGCAGACCCCAAAGACACAGTTGCTAGTAGCCAGAAAATGCCACATGCCTTTGTCATGATGAGGCTCATACTCGTCGTAGTAGGAAGAAAACTTTCACGAAACCCTAATACATACTCTAGTGTGTTAGGACTTCTTTGGTCTCTAATCTCTTTCAAATGGAATATGGAAATGCCTAGTCTTATCAAAGCATCCGTCAAAATCATCTCAGATGCGGGCCTTGGGATGGCTATGTTTAGCTTAGGGCTTTTCATGGCCCTTCAGCCTCGTATCATAGCCTGCGGTACCAAAAGAGCAGTCATGGGCATGGTCATTCGCTTCATGTGTGGGCCTCTTGTAATGTCTGCCTCTTCAATTTCCATTGGATTAAGACAAGAGAGACTACACACTGCCATTGTACAGGCTGCTCTTCCACAGGGGATTGTGCCATTTGTGTTTGCAAGGGAATATGGACTGCATCCTGATATTTTGAGCACAGGGGTTATCTTTGGCATGTTGATATCCTTACCGATAACTCTCTTATATTACATATTTCTTGGCTTATGA

Predicted protein sequences of Glyma14g27900

Limit To All Plant Sequences

>Glyma14g27900.1   sequence type=predicted peptide   gene model=Glyma14g27900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITGEDLYKVMCAMVPLYFAMLVAYGSVKWCKMFTPDQCSGINRFVAVFAVPVLSFHFISMNNPYQMDARFIVADTLSKLVVLLFLSLWAIFFPGGSLDWLITLFSLATLPNTLVMGIPLLQAMYGDFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATVLIQRQFPGPTAASIAKFEVDGDVISLDGHDMPLRTESETDDQGRIRVRIRRSVSSVPETNSSIGGNTAVVTPRPSNLSNADIFSINTPLHLHDGGGDFAAGASPHLSGYASSDAYSLQPTPRASNFNEMEASTPVWGRSPVSAGRGCQQSSPVARVVWGSPGKCLGVERQGCKDIMSDKEISFRDSTKVSKPADPKDTVASSQKMPHAFVMMRLILVVVGRKLSRNPNTYSSVLGLLWSLISFKWNMEMPSLIKASVKIISDAGLGMAMFSLGLFMALQPRIIACGTKRAVMGMVIRFMCGPLVMSASSISIGLRQERLHTAIVQAALPQGIVPFVFAREYGLHPDILSTGVIFGMLISLPITLLYYIFLGL*

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