SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21460 | AT | Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein | chr1:7512030-7513281 REVERSE LENGTH=247 | SoyBase | E_val: 3.00E-123 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005887 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0051119 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1623 | KOG | Multitransmembrane protein | JGI | ISS | |
| PTHR10791 | Panther | STROMAL CELL PROTEIN/NODULIN MTN3-RELATED | JGI | ISS | |
| PF03083 | PFAM | MtN3/saliva family | JGI | ISS | |
| UniRef100_D7KK13 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nodulin MtN3 family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KK13_ARALL | SoyBase | E_val: 1.00E-122 | ISS |
| UniRef100_I1MAE3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAE3_SOYBN | SoyBase | E_val: 6.00E-178 | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| SWEET36 | sucrose effluxer gene 36 |
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Glyma14g27610 not represented in the dataset |
Glyma14g27610 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g120300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g27610.1 sequence type=CDS gene model=Glyma14g27610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGTTGCGCATTTCATTTTCGGGATATTTGGGAATGTTTCTGGTTTGTTCCTCTTCTTGGCCCCAATAGTGACATTCTGGAGGATCATTAAGAACAAATCCACAGAGAAATTTTCGGGGGTTCCTTACCCTATGACCCTTCTCAACTGTCTCCTTTCTGCTTGGTATGGTTTGCCATTTGTGTCCCCAAACAACATACTTGTGACAATAATCAATGGCACAGGAGCAGGGATTGAAATCATATACGTCTTCATCTTCATCTACTTCGCACCAAAGAAAGAGAAGGCCAAGATTCTTGGCCTTTTCTCCTTCGTGGTGGCAGTGTTCTCTGTTGTTGTTCTGGTGTCACTGTTTGCTTTGCATGGCAATGCCCGAAAACTCTTCTGTGGCTTCGCTGCTGCCATATTTTCCATCATCATGTATGGTTCACCACTCTCAATTATGAGGCTAGTGATCAAAACCAAGAGCGTGGAGTTCATGCCCTTCTTCCTCTCACTCTTTGTGTTCCTCTGTGGTACTTCTTGGTTCATCTACGGGCTACTAGGCCGTGACCCATTTGTGGCTGTACCTAATGGGGTTGGTTCTGCGTTGGGAACAGCACAACTAATATTGTATTTTATCTACCGTGACAAAAAAGGGGATCAAAAGAAGAAGCCGAGAACAGAAGAAGAAGAAGCTATGGAAATGGGCACCGCTAATAAAAATCCCATATCCAACTCGAAGGGAGCACAAGAGGGACACGTCTAG
>Glyma14g27610.1 sequence type=predicted peptide gene model=Glyma14g27610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDVAHFIFGIFGNVSGLFLFLAPIVTFWRIIKNKSTEKFSGVPYPMTLLNCLLSAWYGLPFVSPNNILVTIINGTGAGIEIIYVFIFIYFAPKKEKAKILGLFSFVVAVFSVVVLVSLFALHGNARKLFCGFAAAIFSIIMYGSPLSIMRLVIKTKSVEFMPFFLSLFVFLCGTSWFIYGLLGRDPFVAVPNGVGSALGTAQLILYFIYRDKKGDQKKKPRTEEEEAMEMGTANKNPISNSKGAQEGHV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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