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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G43860 | AT | Annotation by Michelle Graham. TAIR10: sequence-specific DNA binding transcription factors | chr1:16622244-16624385 REVERSE LENGTH=370 | SoyBase | E_val: 6.00E-173 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0042254 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis | SoyBase | N/A | ISS |
| GO:0042273 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ribosomal large subunit biogenesis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG2917 | KOG | Predicted exosome subunit | JGI | ISS | |
| PTHR10927 | Panther | SHWACHMAN-BODIAN-DIAMOND SYNDROME PROTEIN | JGI | ISS | |
| PF01172 | PFAM | Shwachman-Bodian-Diamond syndrome (SBDS) protein | JGI | ISS | |
| PF09377 | PFAM | SBDS protein C-terminal domain | JGI | ISS | |
| UniRef100_B9S2M8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Shwachman-Bodian-Diamond syndrome protein, putative n=1 Tax=Ricinus communis RepID=B9S2M8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MAE0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAE0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g27330 not represented in the dataset |
Glyma14g27330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g119400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g27330.3 sequence type=transcript gene model=Glyma14g27330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAACCCTGAAGGCACGTCACATACCTTTACGTTAACCATCTTCCTCTGTTGGCACGCTGCTAGAGAAATTTGGCGCCGCAATTGTCATGACCCAAAATTATATTTTTCTATCGAGTAACCTTTACAACCTTGTGTCGTCAACCACCCTCCACCGCATCGTCGAACACCCGTATGTCGTCGTCGTCTCACCACCACAGCGCCTCGCATTAGAGCACCGGGCCGTCGGAGCAGGTTTTAAGGTTCAACCCAACCAAGTGTGGTGTGAGGAAGAGGTAAAAAGTAACAAAGAGGTGAAAGAGAAAGGAAGAGATGTCTAGGACGCTAGTGCAGCCAATAGGACAGAAGAGGCTAACAAATGTGGCAGTGGTGCGTCTGAAGAAACATGGCATGCGCTTCGAAATCGCTTGCTACCCTAACACCGTCCTCTCTTGGCGTTCTGGCGTGGAAAAGGACCTGGATGAAGTGCTGCAGTCCCACACTGTTTATACCAATGTTTCCAAAGGGGTTCTCGCCAAGTCCAAGGATTTAATTGCAGCTTTTGGCACCGATGACCACTCCAAGATTTGCTTAGATATTTTAAAGAAAGGGGAGCTTCAGGTAGCTGGGAAAGAGAGGGAATCATTGTTATCGAGTCAGTTCAGGGATATTGCGACCATCGTGATGCACAAGACTTACAATCCCGAGACTCAGCGTCCATACACTATCAGTATGATTGAACGCCTCATGCGGGAAATCCATTTTGCTGTTGATCCACACAGCACCTCCAAGAAGCAGGCTCTGGAGTTAATTCAAGAACTTCAGAAGCACTTCCCTATAAAACGGTGTCCGTTGAGAATACGTGCTACTGCTCCTGATGACCAAGTGCCTGAACTTTTAGGAAAGCTGAATGAATGGAATGCTATTGTTATTTCTAAAGAAGGATCTTCTGCTCAGTTATCCGTTATTTTTGAATTGGAACCTGGTCTATATAAGGATTGTCATGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTTTATGTGGAGGGGGATACCCAAGTGGAGCAATACAATGATTATGAGGATATACCTGAAGCCTTGCCCAAAGAACCTTATGATTCTGTGCTTCAATTGAATGAGAAACTTCAAAAGCAAACAATTTCATCTACTAGTAGGCCTACCGAGGGACAACAAAAGCAAAACAAGTGCAGCACATGTAATGTTTCTTTCGATGACTCTAAGCTGTACAGGGAACATCACAAGAGTGAATGGCACAAACACAATATCAAGCGTAAGACAAGGCAACTCCCACCACTTACTGAGGAAGAGTGCATGGCAGACATGGAATTGGGTGATTCAAAATCTGATTTGAAGGATTATTCATTTTAAGATGATGATAAGTGAGTTGGTGTAATCACTTTATTGAAGTCTTGTGTGTATACTTGGGTCAATTTTGTCAGCATAATCTGTGTTATGGTATAAACTATTCACATGGAAATCCTTAAGTATGGTGCAATACAAATTGCAAAGACTAATGCATTTCAATTTTCTTTGTCTGAGTATTTTAATGTACCAAGTAAGTGCAACTAAAGATGGTTGTATGCAGGAGGTTTGCTTCATCGAGCGGTTGCTGTTTAAGGAAATGAAGCAGATTGTCTACTGTACTGTTTCTTATCATAGTTGACCGGTCTGATGCTCTCTGCTAATATTTGGCATGAGTGATGAATTGAATTTTTAGCGCACTAAGAAATTGCCTACAGGCTAATCTTAAAGCTTTTTAGGTTCGTCTAACAATAATGGTATCCGAGACTTCCAAAATTTTCAGGAATAGAAGCACCACATACTTTTGCACTTTCGTTGTTTTAA
>Glyma14g27330.2 sequence type=CDS gene model=Glyma14g27330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTAGGACGCTAGTGCAGCCAATAGGACAGAAGAGGCTAACAAATGTGGCAGTGGTGCGTCTGAAGAAACATGGCATGCGCTTCGAAATCGCTTGCTACCCTAACACCGTCCTCTCTTGGCGTTCTGGCGTGGAAAAGGACCTGGATGAAGTGCTGCAGTCCCACACTGTTTATACCAATGTTTCCAAAGGGGTTCTCGCCAAGTCCAAGGATTTAATTGCAGCTTTTGGCACCGATGACCACTCCAAGATTTGCTTAGATATTTTAAAGAAAGGGGAGCTTCAGGTAGCTGGGAAAGAGAGGGAATCATTGTTATCGAGTCAGTTCAGGGATATTGCGACCATCGTGATGCACAAGACTTACAATCCCGAGACTCAGCGTCCATACACTATCAGTATGATTGAACGCCTCATGCGGGAAATCCATTTTGCTGTTGATCCACACAGCACCTCCAAGAAGCAGGCTCTGGAGTTAATTCAAGAACTTCAGAAGCACTTCCCTATAAAACGGTGTCCGTTGAGAATACGTGCTACTGCTCCTGATGACCAAGTGCCTGAACTTTTAGGAAAGCTGAATGAATGGAATGCTATTGTTATTTCTAAAGAAGGATCTTCTGCTCAGTTATCCGTTATTTTTGAATTGGAACCTGGTCTATATAAGGATTGTCATGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTTTATGTGGAGGGGGATACCCAAGTGGAGCAATACAATGATTATGAGGATATACCTGAAGCCTTGCCCAAAGAACCTTATGATTCTGTGCTTCAATTGAATGAGAAACTTCAAAAGCAAACAATTTCATCTACTAGTAGGCCTACCGAGGGACAACAAAAGCAAAACAAGTGCAGCACATGTAATGTTTCTTTCGATGACTCTAAGCTGTACAGGGAACATCACAAGAGTGAATGGCACAAACACAATATCAAGCGTAAGACAAGGCAACTCCCACCACTTACTGAGGAAGAGTGCATGGCAGACATGGAATTGGGTGATTCAAAATCTGATTTGAAGGATTATTCATTTTAA >Glyma14g27330.3 sequence type=CDS gene model=Glyma14g27330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTAGGACGCTAGTGCAGCCAATAGGACAGAAGAGGCTAACAAATGTGGCAGTGGTGCGTCTGAAGAAACATGGCATGCGCTTCGAAATCGCTTGCTACCCTAACACCGTCCTCTCTTGGCGTTCTGGCGTGGAAAAGGACCTGGATGAAGTGCTGCAGTCCCACACTGTTTATACCAATGTTTCCAAAGGGGTTCTCGCCAAGTCCAAGGATTTAATTGCAGCTTTTGGCACCGATGACCACTCCAAGATTTGCTTAGATATTTTAAAGAAAGGGGAGCTTCAGGTAGCTGGGAAAGAGAGGGAATCATTGTTATCGAGTCAGTTCAGGGATATTGCGACCATCGTGATGCACAAGACTTACAATCCCGAGACTCAGCGTCCATACACTATCAGTATGATTGAACGCCTCATGCGGGAAATCCATTTTGCTGTTGATCCACACAGCACCTCCAAGAAGCAGGCTCTGGAGTTAATTCAAGAACTTCAGAAGCACTTCCCTATAAAACGGTGTCCGTTGAGAATACGTGCTACTGCTCCTGATGACCAAGTGCCTGAACTTTTAGGAAAGCTGAATGAATGGAATGCTATTGTTATTTCTAAAGAAGGATCTTCTGCTCAGTTATCCGTTATTTTTGAATTGGAACCTGGTCTATATAAGGATTGTCATGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTTTATGTGGAGGGGGATACCCAAGTGGAGCAATACAATGATTATGAGGATATACCTGAAGCCTTGCCCAAAGAACCTTATGATTCTGTGCTTCAATTGAATGAGAAACTTCAAAAGCAAACAATTTCATCTACTAGTAGGCCTACCGAGGGACAACAAAAGCAAAACAAGTGCAGCACATGTAATGTTTCTTTCGATGACTCTAAGCTGTACAGGGAACATCACAAGAGTGAATGGCACAAACACAATATCAAGCGTAAGACAAGGCAACTCCCACCACTTACTGAGGAAGAGTGCATGGCAGACATGGAATTGGGTGATTCAAAATCTGATTTGAAGGATTATTCATTTTAA
>Glyma14g27330.2 sequence type=predicted peptide gene model=Glyma14g27330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYTNVSKGVLAKSKDLIAAFGTDDHSKICLDILKKGELQVAGKERESLLSSQFRDIATIVMHKTYNPETQRPYTISMIERLMREIHFAVDPHSTSKKQALELIQELQKHFPIKRCPLRIRATAPDDQVPELLGKLNEWNAIVISKEGSSAQLSVIFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVEGDTQVEQYNDYEDIPEALPKEPYDSVLQLNEKLQKQTISSTSRPTEGQQKQNKCSTCNVSFDDSKLYREHHKSEWHKHNIKRKTRQLPPLTEEECMADMELGDSKSDLKDYSF* >Glyma14g27330.3 sequence type=predicted peptide gene model=Glyma14g27330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYTNVSKGVLAKSKDLIAAFGTDDHSKICLDILKKGELQVAGKERESLLSSQFRDIATIVMHKTYNPETQRPYTISMIERLMREIHFAVDPHSTSKKQALELIQELQKHFPIKRCPLRIRATAPDDQVPELLGKLNEWNAIVISKEGSSAQLSVIFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVEGDTQVEQYNDYEDIPEALPKEPYDSVLQLNEKLQKQTISSTSRPTEGQQKQNKCSTCNVSFDDSKLYREHHKSEWHKHNIKRKTRQLPPLTEEECMADMELGDSKSDLKDYSF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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