Report for Sequence Feature Glyma14g27290
Feature Type: gene_model
Chromosome: Gm14
Start: 33428052
stop: 33432145
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma14g27290
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G21450 AT
Annotation by Michelle Graham. TAIR10: SCARECROW-like 1 | chr1:7509721-7511502 FORWARD LENGTH=593
SoyBase E_val: 0 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PF03514 PFAM
GRAS family transcription factor
JGI ISS
UniRef100_B9H7M7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GRAS family transcription factor n=1 Tax=Populus trichocarpa RepID=B9H7M7_POPTR
SoyBase E_val: 0 ISS
UniRef100_I1MAD8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAD8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma14g27290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma14g27290 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.14g119100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma14g27290
Coding sequences of Glyma14g27290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma14g27290.1 sequence type=CDS gene model=Glyma14g27290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCATTGGTTATATCTGCAGAGTTGGCTGATACATCATATGGAAATGCCAAGCTCTACACACTAAAGGGAACGGATGTTACACCAGATTTGTCCTCCCACAATTTTGCACCAGATAAGCACAGAAACATGTATATGACAAAGTCACACTCCTGTGAGAGTTATGCAAAGTACTTCCGGGATTCACCAACAGAAGAACTGATAGAACCGTCTAGTTCCAGCATATCAGGAAACTCAGTTCACCCTGATGGTGCTTCTTCTTACCTGCTAAGAGCTAGTTCAGGAGCTTCTGTGATTGTTAATAACCCATTTGACACTTCTATCTGGTCTACAAGGCATCGCGATGCCTATCAGTCCAATTCTGGATCAGATTTCGTGGAAAACGGGAGTCCGGATGGCCTTGACTTCGATGGTGAAATGAGATTAAAACTTCAAGAATTGGAGAGGGCTTTGCTTTCTGATGAAGAAGAGGAGGAGGAAGGCATGTTTGAGACTGTTCAAAGCATGGAGATTGATCCAGACATGGTCGAGTGGGCCAATCCGCTTCAAGATATGTTGCTCCATGACTCACCAAAGGAGTCCTCATCCTCAGATTCTTCCAATCTTACCAGCATCAGCAGCACAACCAAAGACACATCACAAAACTCGCCCCAAACCCCTAAGCAACTGCTTTATGATTGTGCTAGAGTACTTTCAGAAGGAAATGAAGAGGAAGCCACATCTATGATAAACAAGCTCCGGCAAATGGTCTCAATTCAGGGTGATCCTTCTCAAAGAATTGCGGCTTACATGGTGGAAGGACTTGCAGCTCGTGTCGCTACATCCGGAAAATGCATCTATCAAGCATTGAGATGCAAGGAACCTCCTTCTAACGATCGCTTAGCAGCAATGCAGATACTATTTGAGGTCTGCCCATGTTTTAAATTTGGATACATCGCTGCAAATGGCGCGATAGCTGAGGTTGTTAGAGATGAAAAGAAGGTTCACATAATAGACTTTGACATCAGCCAAGGAACTCAATACATAACTCTAATACAAACACTTGCTTCAATGCCAGGTAGGCCACCTCGTGTGAGATTAACTGCGGTGGACGATCCTGAGTCTGTGCAGCGTTCCATCGGTGGCATAAACATCATAGGACAAAGACTTGAAAAGCTGGCAGAGGAACTCAGATTGCCATTTGAGTTTCGAGCTGTGGCGTCAAGGACGTCAATTGTCTCACCATCAATGCTCAACTGTCGTCCAGGGGAAGCACTTGTGGTGAACTTTGCATTCCAGCTTCACCACATGCGCGATGAAACTGTATCGACCGTGAACGAGAGAGACCAACTTCTTCGCATGGTTAAGAGCTTGAATCCAAAAATTGTGACAGTTGTGGAGCAGGACATGAACACCAACACCTCCCCTTTTCTCCCAAGATTCATTGAAACCTACAATTACTACTCTGCTGTGTTTGACACACTTGATGCAACTCTCCCAAGGGAGAGCCAGGACAGGATGAATGTCGAAAGGCAATGCCTGGCAAAGGACATTGTCAACATTGTTGCATGTGAGGGCGAGGAAAGAATAGAACGGTATGAAGTCGCCGGAAAATGGAGGGCGAGGTTGTCGATGGCTGGCTTCACTCCATCTCCAATGAGCACAAATGTGAGAGAAGCAATTAGGAATCTCATTATTAAGCAATACTGTGACAAGTTCAAGATAAAGGAGGAAATGGGGGGTCTTCATTTTGGGTGGGAAGACAAAAACTTAATTGTTGCTTCAGCATGGAAGTGA
Predicted protein sequences of Glyma14g27290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma14g27290.1 sequence type=predicted peptide gene model=Glyma14g27290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSLVISAELADTSYGNAKLYTLKGTDVTPDLSSHNFAPDKHRNMYMTKSHSCESYAKYFRDSPTEELIEPSSSSISGNSVHPDGASSYLLRASSGASVIVNNPFDTSIWSTRHRDAYQSNSGSDFVENGSPDGLDFDGEMRLKLQELERALLSDEEEEEEGMFETVQSMEIDPDMVEWANPLQDMLLHDSPKESSSSDSSNLTSISSTTKDTSQNSPQTPKQLLYDCARVLSEGNEEEATSMINKLRQMVSIQGDPSQRIAAYMVEGLAARVATSGKCIYQALRCKEPPSNDRLAAMQILFEVCPCFKFGYIAANGAIAEVVRDEKKVHIIDFDISQGTQYITLIQTLASMPGRPPRVRLTAVDDPESVQRSIGGINIIGQRLEKLAEELRLPFEFRAVASRTSIVSPSMLNCRPGEALVVNFAFQLHHMRDETVSTVNERDQLLRMVKSLNPKIVTVVEQDMNTNTSPFLPRFIETYNYYSAVFDTLDATLPRESQDRMNVERQCLAKDIVNIVACEGEERIERYEVAGKWRARLSMAGFTPSPMSTNVREAIRNLIIKQYCDKFKIKEEMGGLHFGWEDKNLIVASAWK*