Glyma14g26700 - SoyBase

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Report for Sequence Feature Glyma14g26700

Feature Type:	gene_model
Chromosome:	Gm14
Start:	32779373
stop:	32780827
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g26700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G31130	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in 29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). \| chr1:11114963-11115928 REVERSE LENGT	SoyBase	E_val: 1.00E-62	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009814	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1MAD0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAD0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SA06	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F28K20.6 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SA06_ARATH	SoyBase	E_val: 5.00E-60	ISS

Expression Patterns of Glyma14g26700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g26700

Paralog	Evidence	Comments
Glyma13g09240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g26700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g118500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g26700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g26700

Limit To All Plant Sequences

>Glyma14g26700.1   sequence type=CDS   gene model=Glyma14g26700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGAGAACAAGAAGAGATGCAATTTCTTGGGTTCTTTGGCATCTACAAAGAAGCCTCCAAGATCATACTTTCATGGAGGAGAATCTTCACCCAAATCACCTCAACACTAATCCTCCCTCTCTCCTTCATCTTCCTCATCCACATGGAAATCTCCAACCTCCTCTTCAGGAAGATTCTCATCAACGAAATAGTCATGGACGAAACAAAGCCTAACACACCTCAATACAACAAGCTCGATCACATGATCTCTTCAGAAATGGTCACTCTTGTGGTCTTCAAAATCGCATACTTCACTCTGCTCCTCATATTCTCCCTCCTCTCCACCTCGGCAGTGGTCTACACCATCGCCTCCATCTACACCGCAAAAGACGTGACATTCAAGAGGGTCATGAGTGTTGTCCCTAAGGTGTGGAAGAGGCTCATGTTGACCTTTCTATGTGCCTTTGCTGCTTTCTTCGCTTACAATATCATGACTGCGCTAGTTATGTTCTTGTCCATAGTCACAATTGGGTTAAGTAGTGGTGGGCTTGCGGTTTTGGTTTCGATAACGGTTTTGTACTTCATTGGGTTTGTGTACCTCACCGTGGTGTGGCAACTAGCCAGCGTTGTCACTGTGTTGGAGGACTCGTGGGGGGTTCGAGCCATGGCGAAGAGCAAGGAGTTGATAAGGGGGAAGATGGTTTTGTCCATATTCATCTTTTTCACCCTTGTGGCTTCTTTTGTTTCCATTAGGGTTTTGTTCAAGGTGATGGTGGTGGATGGATGGAGGGTGAGTTCTTTGGACAAAACAGCATATGGGGTTCTCTGTTTCTTGCTATTGTCTTGTTTGTTCCTCTTTGGGCTTGTTTTGCAAACTGTGCTCTACTTTGTTTGCAAGTCCTATCACCATGAGAATATTGACAAATCGGCTTTGGCAGATCATCTTGAAGGGTATCGTGGAGAGTATGTGCCATTGACGGCTAAGGATGTTCAGCTGGAGCAGTACCAAGTTTGA

Predicted protein sequences of Glyma14g26700

Limit To All Plant Sequences

>Glyma14g26700.1   sequence type=predicted peptide   gene model=Glyma14g26700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDREQEEMQFLGFFGIYKEASKIILSWRRIFTQITSTLILPLSFIFLIHMEISNLLFRKILINEIVMDETKPNTPQYNKLDHMISSEMVTLVVFKIAYFTLLLIFSLLSTSAVVYTIASIYTAKDVTFKRVMSVVPKVWKRLMLTFLCAFAAFFAYNIMTALVMFLSIVTIGLSSGGLAVLVSITVLYFIGFVYLTVVWQLASVVTVLEDSWGVRAMAKSKELIRGKMVLSIFIFFTLVASFVSIRVLFKVMVVDGWRVSSLDKTAYGVLCFLLLSCLFLFGLVLQTVLYFVCKSYHHENIDKSALADHLEGYRGEYVPLTAKDVQLEQYQV*

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