Glyma14g26660 - SoyBase

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Report for Sequence Feature Glyma14g26660

Feature Type:	gene_model
Chromosome:	Gm14
Start:	32631811
stop:	32636514
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g26660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77000	AT	Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein \| chr1:28940888-28942401 FORWARD LENGTH=360	SoyBase	E_val: 0	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0051603	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis involved in cellular protein catabolic process	SoyBase	N/A	ISS
GO:1901332	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of lateral root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
KOG1947	KOG	Leucine rich repeat proteins, some proteins contain F-box	JGI		ISS
PTHR23125	Panther	F-BOX/LEUCINE RICH REPEAT PROTEIN	JGI		ISS
PTHR23125:SF104	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_B9S2N9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/LRR-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9S2N9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MAC7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAC7_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma14g26660

Locus	Gene Symbol	Protein Name
	SKP2A	protein binding

Expression Patterns of Glyma14g26660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g26660

Paralog	Evidence	Comments
Glyma13g09290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g26660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g118200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g26660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g26660

Limit To All Plant Sequences

>Glyma14g26660.2   sequence type=transcript   gene model=Glyma14g26660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACCACTGAACGCAAGACAGAAAACGTTGCGTCAGGACTCGTCTTTCCAATCTCCATCCAATATCCTCGCTAGACAAACCTAGCAGCATCTTCTGCTTTTTCGCGCGGTTTCTGGTTCAGGGCTAAGAATATCTGACTTTGGGGTGGAAAGTATGGTTGGCAAGGAGAGTTTGAGAACTGAGGTCTTGAACTTGAGCTTTGAGAAGCTTATGATGGTTGAATGTGGTGGAAATAGTGGGAAAGGAGTGAACATTAAAGCTGGTGTGATCACGGAGTGGAAGGATATTCCAGTTGAGCTTTTGATGCAAATTTTGTCACTTGTGGATGATCAAACGGTTATCATAGCTTCTGAAGTGTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTTACTCGGTTATCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCCCTTTCTCCTAAATTCACAAAACTGCAGACTTTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGACAATGCTGTTGAAACTATAGCAAATTTCTGTCATGACCTCCAAATCTTGGACCTCAGCAAAAGTTTCAAGCTTACTGATCGCTCATTGTATGCCGTAGCCCTTGGTTGTCGGGATCTTACAAAACTGAACATCAGTGGTTGTTCAGCCTTTAGTGACAATGCTCTGGCTTACCTGGCCAGTTTTTGTAGAAAGCTGAAAGTTTTGAATCTCTGTGGATGTGTTAAAGCTGCATCTGACACTGCGTTACAGGCAATTGGGCATTACTGCAATCAGTTACAGTTTTTGAACCTTGGGTGGTGTGAAAATGTCAGTGATGTTGGAGTGATGAGTTTAGCATATGGCTGCCCTGATCTTAGAACACTTGACTTATGTGGTTGTGTCCTTATAACAGATGACAGTGTAATTGTCTTGGCAAACAGATGTCCTCATCTGAGGTCCCTTGGGCTGTACTACTGCCAAAGCATAACAGACAAGGCAATGTACTCTTTGGCACAAAGCAAATTGAACAACAGGATGTGGGGGTCTGTGAAAGGTGGTGGAAATGATGATGATGGACTAAGAACTCTGAACATTAGCCAATGCACAGCACTCACCCCTTCTGCTGTGCAGGCTGTGTGTGACTCATGCCCTTCCCTCCACACCTGTTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTGAACCTGACTTCTGTGCATTGTGTTTGTGCTGGCCAAGCACACCGTGCTATCACTCTCCCTCATGCAGCTCATTGAGCCAGAGGGGTTGATGATGTATAAAAGGACACTTTGATGAGGAAGTGCCCTTGAAGGGTTTTAAAGTTTTAGGGGTCTTCTGGATAAGTTTATGTTCAATGCTGCATCATGTCATGTTGGTTGTAGAACAGCTTGAACCTTGGTGCTTGAGTCTCTTTTGGTCTCCGATTTTCATGTGAAGGGTTAGGATATTTTTGGTGTCAAAATGTGGTTTATTCCTAGCTTGGTTATGAATTTATGGTGAGACATGGACTTTTATATAATGGTATTATTTTATGCCAGGATGTGTGTTTTCTCTTATTGGGAGTTAAGAAACCTTGGGTAAGTTGGATTTTCTTTGGTTAGGATTTGTCTAGATATGAAATGCATTTCTTGAAATTGGATTTTTCTTCTTAGATTGTTACTTTAGATTAGAACTATAATTAATTTCAATGG

>Glyma14g26660.3   sequence type=transcript   gene model=Glyma14g26660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAAACGTTGCGTCAGGACTCGTCTTTCCAATCTCCATCCAATATCCTCGCTAGACAAACCTAGCAGCATCTTCTGCTTTTTCGCGCGGTTTCTGGTTCAGCTAGCAAAGAAGCGAAGACCCCTTTTTCTGGTTATTAACAGAGTCATAAAAAACCAAAGTTTTCTATTCTCTGTAGCTCACATGGTGGGCTAAGAATATCTGACTTTGGGGTGGAAAGTATGGTTGGCAAGGAGAGTTTGAGAACTGAGGTCTTGAACTTGAGCTTTGAGAAGCTTATGATGGTTGAATGTGGTGGAAATAGTGGGAAAGGAGTGAACATTAAAGCTGGTGTGATCACGGAGTGGAAGGATATTCCAGTTGAGCTTTTGATGCAAATTTTGTCACTTGTGGATGATCAAACGGTTATCATAGCTTCTGAAGTGTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTTACTCGGTTATCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCCCTTTCTCCTAAATTCACAAAACTGCAGACTTTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGACAATGCTGTTGAAACTATAGCAAATTTCTGTCATGACCTCCAAATCTTGGACCTCAGCAAAAGTTTCAAGCTTACTGATCGCTCATTGTATGCCGTAGCCCTTGGTTGTCGGGATCTTACAAAACTGAACATCAGTGGTTGTTCAGCCTTTAGTGACAATGCTCTGGCTTACCTGGCCAGTTTTTGTAGAAAGCTGAAAGTTTTGAATCTCTGTGGATGTGTTAAAGCTGCATCTGACACTGCGTTACAGGCAATTGGGCATTACTGCAATCAGTTACAGTTTTTGAACCTTGGGTGGTGTGAAAATGTCAGTGATGTTGGAGTGATGAGTTTAGCATATGGCTGCCCTGATCTTAGAACACTTGACTTATGTGGTTGTGTCCTTATAACAGATGACAGTGTAATTGTCTTGGCAAACAGATGTCCTCATCTGAGGTCCCTTGGGCTGTACTACTGCCAAAGCATAACAGACAAGGCAATGTACTCTTTGGCACAAAGCAAATTGAACAACAGGATGTGGGGGTCTGTGAAAGGTGGTGGAAATGATGATGATGGACTAAGAACTCTGAACATTAGCCAATGCACAGCACTCACCCCTTCTGCTGTGCAGGCTGTGTGTGACTCATGCCCTTCCCTCCACACCTGTTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTGAACCTGACTTCTGTGCATTGTGTTTGTGCTGGCCAAGCACACCGTGCTATCACTCTCCCTCATGCAGCTCATTGAGCCAGAGGGGTTGATGATGTATAAAAGGACACTTTGATGAGGAAGTGCCCTTGAAGGGTTTTAAAGTTTTAGGGGTCTTCTGGATAAGTTTATGTTCAATGCTGCATCATGTCATGTTGGTTGTAGAACAGCTTGAACCTTGGTGCTTGAGTCTCTTTTGGTCTCCGATTTTCATGTGAAGGGTTAGGATATTTTTGGTGTCAAAATGTGGTTTATTCCTAGCTTGGTTATGAATTTATGGTGAGACATGGACTTTTATATAATGGTATTATTTTATGCCAGGATGTGTGTTTTCTCTTATTGGGAGTTAAGAAACCTTGGGTAAGTTGGATTTTCTTTGGTTAGGATTTGTCTAGATATGAAATGCATTTCTTGAAATTGGATTTTTCTTCTTAGATTGTTACTTTAGATTAGAACTATAATTAATTTCAATGG

Coding sequences of Glyma14g26660

Limit To All Plant Sequences

>Glyma14g26660.1   sequence type=CDS   gene model=Glyma14g26660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGCAAGGAGAGTTTGAGAACTGAGGTCTTGAACTTGAGCTTTGAGAAGCTTATGATGGTTGAATGTGGTGGAAATAGTGGGAAAGGAGTGAACATTAAAGCTGGTGTGATCACGGAGTGGAAGGATATTCCAGTTGAGCTTTTGATGCAAATTTTGTCACTTGTGGATGATCAAACGGTTATCATAGCTTCTGAAGTGTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTTACTCGGTTATCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCCCTTTCTCCTAAATTCACAAAACTGCAGACTTTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGACAATGCTGTTGAAACTATAGCAAATTTCTGTCATGACCTCCAAATCTTGGACCTCAGCAAAAGTTTCAAGCTTACTGATCGCTCATTGTATGCCGTAGCCCTTGGTTGTCGGGATCTTACAAAACTGAACATCAGTGGTTGTTCAGCCTTTAGTGACAATGCTCTGGCTTACCTGGCCAGTTTTTGTAGAAAGCTGAAAGTTTTGAATCTCTGTGGATGTGTTAAAGCTGCATCTGACACTGCGTTACAGGCAATTGGGCATTACTGCAATCAGTTACAGTTTTTGAACCTTGGGTGGTGTGAAAATGTCAGTGATGTTGGAGTGATGAGTTTAGCATATGGCTGCCCTGATCTTAGAACACTTGACTTATGTGGTTGTGTCCTTATAACAGATGACAGTGTAATTGTCTTGGCAAACAGATGTCCTCATCTGAGGTCCCTTGGGCTGTACTACTGCCAAAGCATAACAGACAAGGCAATGTACTCTTTGGCACAAAGCAAATTGAACAACAGGATGTGGGGGTCTGTGAAAGGTGGTGGAAATGATGATGATGGACTAAGAACTCTGAACATTAGCCAATGCACAGCACTCACCCCTTCTGCTGTGCAGGCTGTGTGTGACTCATGCCCTTCCCTCCACACCTGTTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTGAACCTGACTTCTGTGCATTGTGTTTGTGCTGGCCAAGCACACCGTGCTATCACTCTCCCTCATGCAGCTCATTGA

>Glyma14g26660.2   sequence type=CDS   gene model=Glyma14g26660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGCAAGGAGAGTTTGAGAACTGAGGTCTTGAACTTGAGCTTTGAGAAGCTTATGATGGTTGAATGTGGTGGAAATAGTGGGAAAGGAGTGAACATTAAAGCTGGTGTGATCACGGAGTGGAAGGATATTCCAGTTGAGCTTTTGATGCAAATTTTGTCACTTGTGGATGATCAAACGGTTATCATAGCTTCTGAAGTGTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTTACTCGGTTATCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCCCTTTCTCCTAAATTCACAAAACTGCAGACTTTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGACAATGCTGTTGAAACTATAGCAAATTTCTGTCATGACCTCCAAATCTTGGACCTCAGCAAAAGTTTCAAGCTTACTGATCGCTCATTGTATGCCGTAGCCCTTGGTTGTCGGGATCTTACAAAACTGAACATCAGTGGTTGTTCAGCCTTTAGTGACAATGCTCTGGCTTACCTGGCCAGTTTTTGTAGAAAGCTGAAAGTTTTGAATCTCTGTGGATGTGTTAAAGCTGCATCTGACACTGCGTTACAGGCAATTGGGCATTACTGCAATCAGTTACAGTTTTTGAACCTTGGGTGGTGTGAAAATGTCAGTGATGTTGGAGTGATGAGTTTAGCATATGGCTGCCCTGATCTTAGAACACTTGACTTATGTGGTTGTGTCCTTATAACAGATGACAGTGTAATTGTCTTGGCAAACAGATGTCCTCATCTGAGGTCCCTTGGGCTGTACTACTGCCAAAGCATAACAGACAAGGCAATGTACTCTTTGGCACAAAGCAAATTGAACAACAGGATGTGGGGGTCTGTGAAAGGTGGTGGAAATGATGATGATGGACTAAGAACTCTGAACATTAGCCAATGCACAGCACTCACCCCTTCTGCTGTGCAGGCTGTGTGTGACTCATGCCCTTCCCTCCACACCTGTTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTGAACCTGACTTCTGTGCATTGTGTTTGTGCTGGCCAAGCACACCGTGCTATCACTCTCCCTCATGCAGCTCATTGA

>Glyma14g26660.3   sequence type=CDS   gene model=Glyma14g26660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGCAAGGAGAGTTTGAGAACTGAGGTCTTGAACTTGAGCTTTGAGAAGCTTATGATGGTTGAATGTGGTGGAAATAGTGGGAAAGGAGTGAACATTAAAGCTGGTGTGATCACGGAGTGGAAGGATATTCCAGTTGAGCTTTTGATGCAAATTTTGTCACTTGTGGATGATCAAACGGTTATCATAGCTTCTGAAGTGTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTTACTCGGTTATCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCCCTTTCTCCTAAATTCACAAAACTGCAGACTTTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGACAATGCTGTTGAAACTATAGCAAATTTCTGTCATGACCTCCAAATCTTGGACCTCAGCAAAAGTTTCAAGCTTACTGATCGCTCATTGTATGCCGTAGCCCTTGGTTGTCGGGATCTTACAAAACTGAACATCAGTGGTTGTTCAGCCTTTAGTGACAATGCTCTGGCTTACCTGGCCAGTTTTTGTAGAAAGCTGAAAGTTTTGAATCTCTGTGGATGTGTTAAAGCTGCATCTGACACTGCGTTACAGGCAATTGGGCATTACTGCAATCAGTTACAGTTTTTGAACCTTGGGTGGTGTGAAAATGTCAGTGATGTTGGAGTGATGAGTTTAGCATATGGCTGCCCTGATCTTAGAACACTTGACTTATGTGGTTGTGTCCTTATAACAGATGACAGTGTAATTGTCTTGGCAAACAGATGTCCTCATCTGAGGTCCCTTGGGCTGTACTACTGCCAAAGCATAACAGACAAGGCAATGTACTCTTTGGCACAAAGCAAATTGAACAACAGGATGTGGGGGTCTGTGAAAGGTGGTGGAAATGATGATGATGGACTAAGAACTCTGAACATTAGCCAATGCACAGCACTCACCCCTTCTGCTGTGCAGGCTGTGTGTGACTCATGCCCTTCCCTCCACACCTGTTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTGAACCTGACTTCTGTGCATTGTGTTTGTGCTGGCCAAGCACACCGTGCTATCACTCTCCCTCATGCAGCTCATTGA

Predicted protein sequences of Glyma14g26660

Limit To All Plant Sequences

>Glyma14g26660.1   sequence type=predicted peptide   gene model=Glyma14g26660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGKESLRTEVLNLSFEKLMMVECGGNSGKGVNIKAGVITEWKDIPVELLMQILSLVDDQTVIIASEVCRGWREAICFGLTRLSLSWCSKNMNNLVLSLSPKFTKLQTLILRQDKPQLEDNAVETIANFCHDLQILDLSKSFKLTDRSLYAVALGCRDLTKLNISGCSAFSDNALAYLASFCRKLKVLNLCGCVKAASDTALQAIGHYCNQLQFLNLGWCENVSDVGVMSLAYGCPDLRTLDLCGCVLITDDSVIVLANRCPHLRSLGLYYCQSITDKAMYSLAQSKLNNRMWGSVKGGGNDDDGLRTLNISQCTALTPSAVQAVCDSCPSLHTCSGRHSLIMSGCLNLTSVHCVCAGQAHRAITLPHAAH*

>Glyma14g26660.2   sequence type=predicted peptide   gene model=Glyma14g26660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGKESLRTEVLNLSFEKLMMVECGGNSGKGVNIKAGVITEWKDIPVELLMQILSLVDDQTVIIASEVCRGWREAICFGLTRLSLSWCSKNMNNLVLSLSPKFTKLQTLILRQDKPQLEDNAVETIANFCHDLQILDLSKSFKLTDRSLYAVALGCRDLTKLNISGCSAFSDNALAYLASFCRKLKVLNLCGCVKAASDTALQAIGHYCNQLQFLNLGWCENVSDVGVMSLAYGCPDLRTLDLCGCVLITDDSVIVLANRCPHLRSLGLYYCQSITDKAMYSLAQSKLNNRMWGSVKGGGNDDDGLRTLNISQCTALTPSAVQAVCDSCPSLHTCSGRHSLIMSGCLNLTSVHCVCAGQAHRAITLPHAAH*

>Glyma14g26660.3   sequence type=predicted peptide   gene model=Glyma14g26660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGKESLRTEVLNLSFEKLMMVECGGNSGKGVNIKAGVITEWKDIPVELLMQILSLVDDQTVIIASEVCRGWREAICFGLTRLSLSWCSKNMNNLVLSLSPKFTKLQTLILRQDKPQLEDNAVETIANFCHDLQILDLSKSFKLTDRSLYAVALGCRDLTKLNISGCSAFSDNALAYLASFCRKLKVLNLCGCVKAASDTALQAIGHYCNQLQFLNLGWCENVSDVGVMSLAYGCPDLRTLDLCGCVLITDDSVIVLANRCPHLRSLGLYYCQSITDKAMYSLAQSKLNNRMWGSVKGGGNDDDGLRTLNISQCTALTPSAVQAVCDSCPSLHTCSGRHSLIMSGCLNLTSVHCVCAGQAHRAITLPHAAH*

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