Glyma14g25860 - SoyBase

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Report for Sequence Feature Glyma14g25860

Feature Type:	gene_model
Chromosome:	Gm14
Start:	31470493
stop:	31475301
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g25860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49260	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 21 \| chr3:18262755-18265859 FORWARD LENGTH=471	SoyBase	E_val: 1.00E-101	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR10699	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR10699:SF9	Panther	CALMODULIN BINDING	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_G7J7E7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IQ-domain-containing protein n=2 Tax=Medicago truncatula RepID=G7J7E7_MEDTR	SoyBase	E_val: 4.00E-127	ISS
UniRef100_I1MAB5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAB5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g25860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g25860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g159300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g25860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g25860

Limit To All Plant Sequences

>Glyma14g25860.1   sequence type=CDS   gene model=Glyma14g25860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAAAGGAGGCAGCTGGTTCTCATCTGTGAAGAAAGTTTTCAAGTCATCTTCTAAAGATTCGCCCCAGCCTGAGAAGAAGAAGGACAACACACAGAAATTACAGCATGAAGTGGCAGAGGTGGTGTCCTTTGAGCATTTTCCTGCAGAGAGTTCTCCAGATAATGTGAGCAATGCAGAGATGAGTACGACATCAACGCCAGTGACCAACGAAGATAGAAGCCATGCGATTGCCGTTGCAGCAGCAACTGCCGCAGCTGCAGAAGCTGCTGTGGTGGCTGCTCAAGCAGCTGCAAGAGTTGTAAGATTGGCAGGAAGTTACGGGCGGCAGTCCAAGGAAGAAAGAGCAGCAACACTCATTCAATCATACTATAGAGGCTACCTGGCTCGACGTGCACTACGAGCATTGAAGGGATTAGTGAGGCTGCAAGCACTGGTGAGGGGACACAATGTGCGGAAGCAAGCGCAGATGACGATGCGGTGCATGCAAGCACTGGTGAGGGTGCAGGCACGAGTACGGGCTCGCCGATTCCAATTGAGTCACGCGGATCAGGAAAGAGAGAAGAAAGAAGAGCCCAAGCCCATACCCGTGCCCGTGCCCATGAGCCCCCTGAGAAGAATAGACGACATTAATGACTGGGACAATAGGCGTCAAAGTAGCTACAAAATTAAGGAAAACGATTTGCGGAAACATGAAGCTGTAATGAAGAGAGAGAGAGCTCTTGCATACGCTTTCAACTATCAACAGCAACAACAAAAGCAATTTTTGCAGCCAGACTGGAATGGTAATGATGATGTAGGAACAAACTATGAGCATGAAAAAGCCCAATGGGGTTGGAACTGGTTGGAGCGTTGGATGTCATCCCAACCATACAATGTCAGGAACATGGGGCCACATGAGACCTCTTACATGACTCTTGCTTCTACAACATCAACTACCACTGATAACATGTCTGAGAAGACCGTAGAAATGGACATGGTTGCAACTCCAGGCCCAACCAACACTAGAAATGTCAGTCCCATGAACCAAGACTTTGTTGATTTAAGCCCAGTTTCTAATAGGCACCGTCACATACCTCCCAGCCCAAATAGACCTAGCTATATGACCCCAACTCAGTCTGCAAAGGCCAAGGTTCGAGCCCAAGGCCCATCCAAGCCTCGAGTTTCAGTTGGGCAGTGGAACTTCTCAACAAAGGGAGGTTCGACTGGTGACTCATCTAGCTCGGGAGGACGAATTGTCGCTTACCAATTTCCAAGGAGCCCAGGCCCAAAAATTAATGGCATTCGGTCACAGTCTAAAAGGATTGTGGGTAGCAGTCCAGATTACACTGAAGATTGGACCCTTCCACTCGGAGCCCATGGCTGGGCATAA

Predicted protein sequences of Glyma14g25860

Limit To All Plant Sequences

>Glyma14g25860.1   sequence type=predicted peptide   gene model=Glyma14g25860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKGGSWFSSVKKVFKSSSKDSPQPEKKKDNTQKLQHEVAEVVSFEHFPAESSPDNVSNAEMSTTSTPVTNEDRSHAIAVAAATAAAAEAAVVAAQAAARVVRLAGSYGRQSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRFQLSHADQEREKKEEPKPIPVPVPMSPLRRIDDINDWDNRRQSSYKIKENDLRKHEAVMKRERALAYAFNYQQQQQKQFLQPDWNGNDDVGTNYEHEKAQWGWNWLERWMSSQPYNVRNMGPHETSYMTLASTTSTTTDNMSEKTVEMDMVATPGPTNTRNVSPMNQDFVDLSPVSNRHRHIPPSPNRPSYMTPTQSAKAKVRAQGPSKPRVSVGQWNFSTKGGSTGDSSSSGGRIVAYQFPRSPGPKINGIRSQSKRIVGSSPDYTEDWTLPLGAHGWA*

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