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Report for Sequence Feature Glyma14g24860

Feature Type:gene_model
Chromosome:Gm14
Start:29966155
stop:29973516
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g24860
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77120AT Annotation by Michelle Graham. TAIR10: alcohol dehydrogenase 1 | chr1:28975509-28977216 FORWARD LENGTH=379 SoyBaseE_val: 0ISS
GO:0001666GO-bp Annotation by Michelle Graham. GO Biological Process: response to hypoxia SoyBaseN/AISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0045333GO-bp Annotation by Michelle Graham. GO Biological Process: cellular respiration SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0004022GO-mf Annotation by Michelle Graham. GO Molecular Function: alcohol dehydrogenase (NAD) activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG0022 KOG Alcohol dehydrogenase, class III JGI ISS
PTHR11695Panther ALCOHOL DEHYDROGENASE RELATED JGI ISS
PTHR11695:SF4Panther ARYL-ALCOHOL DEHYDROGENASE JGI ISS
PF00107PFAM Zinc-binding dehydrogenase JGI ISS
PF08240PFAM Alcohol dehydrogenase GroES-like domain JGI ISS
UniRef100_I1MA91UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=3 Tax=Glycine max RepID=I1MA91_SOYBN SoyBaseE_val: 0ISS
UniRef100_P12886UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alcohol dehydrogenase 1 n=1 Tax=Pisum sativum RepID=ADH1_PEA SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g24860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g24860
ParalogEvidenceComments
Glyma13g09530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g24860 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g156400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g24860
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g24860
>Glyma14g24860.1   sequence type=CDS   gene model=Glyma14g24860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTGCAGCTGCGGTGGCATGGGAAGCAGGGAAGCCACTGTCAATAGAAACCATAGAAGTGGCACCACCCCAGAAAGGTGAAGTGCGTTTGAGGATCCTCTTCAACTCCCTTTGCCGTAGTGATGTTTATTGGTGGGATGCTAAGGACCAGACTCCTCTGTTTCCTCGTATCTTAGGCCACGAAGCTTCAGGGATTGTGGAGAGCGTGGGCGAGGGTGTGACACATCTGAAACCAGGTGACCATGCACTCCCAATATTCACTGGGGAGTGTGGTGAATGCACTTATTGTAAGTCTGAAGAGAGCAACCTGTGTGAGCTACTCAGGATCAACACTGACAGGGGTGTTATGCTGAGTGATGGAAAAACAAGGTTCTCCAAAAATGGCCAACCCATTTACCACTTCGTTGGAACCTCCACTTTCAGTGAATACACTGTTCTCCATGAAGGATGTGTAGCCAAGATTAACCCTAATGCCCCACTTGACAAAGTTGCTATTGTCAGCTGTGGATTCTGCACAGGTTTTGGGGCTACTGTGAATGTTGCAAAACCAAAGCCTAATAATACTGTTGCTGTCTTTGGCTTAGGAGCTGTTGGTCTTGCTGCCTGTGAAGGGGCAAGGGTTTCTGGTGCATCTAGAATCATCGGGGTTGATTTACTTCCCAATCGATTTGAACAAGCCAAAAAATTTGGGGTCACTGATTTTGTAAACCCGAAAGATCACAACAAACCAGTCCAAGAGGTCATTGCTGAAATGACTAATGGAGGAGTAGATCGTGCTATTGAATGCACTGGAAGCATCCAAGCTTCAATCTCAGCATTTGAATGCACTCATGATGGTTGGGGTACTGCTGTCCTTGTTGGTGTGCCAAAGAAGGATGTTGAATTCAAAACTAATCCTATGAAGTTCATGGAAGGGAGAACTCTTAAGGGTACCTTCTATGGTCACTACAGACCCCGCACTGACATTCCTGGTGTTGTGGAGAAGTACCTCAACAAGGAGTTGGAACTAGACAAATTTATCACTCACTCTGTGCCATTCTCAAAGATCAACACTGCATTTGATCTTATGCTGAAAGGGGAGGGCATAAGGTGCCTCATCTGCATGGAAGAGTAA
Predicted protein sequences of Glyma14g24860
>Glyma14g24860.1   sequence type=predicted peptide   gene model=Glyma14g24860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRAAAVAWEAGKPLSIETIEVAPPQKGEVRLRILFNSLCRSDVYWWDAKDQTPLFPRILGHEASGIVESVGEGVTHLKPGDHALPIFTGECGECTYCKSEESNLCELLRINTDRGVMLSDGKTRFSKNGQPIYHFVGTSTFSEYTVLHEGCVAKINPNAPLDKVAIVSCGFCTGFGATVNVAKPKPNNTVAVFGLGAVGLAACEGARVSGASRIIGVDLLPNRFEQAKKFGVTDFVNPKDHNKPVQEVIAEMTNGGVDRAIECTGSIQASISAFECTHDGWGTAVLVGVPKKDVEFKTNPMKFMEGRTLKGTFYGHYRPRTDIPGVVEKYLNKELELDKFITHSVPFSKINTAFDLMLKGEGIRCLICMEE*






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