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Report for Sequence Feature Glyma14g24810

Feature Type:gene_model
Chromosome:Gm14
Start:29903424
stop:29905154
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g24810
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G21550AT Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein | chr1:7553317-7553784 REVERSE LENGTH=155 SoyBaseE_val: 4.00E-30ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI ISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF141Panther CALCIUM-BINDING PROTEIN JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_C6T243UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T243_SOYBN SoyBaseE_val: 1.00E-110ISS
UniRef100_G7I8G4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-like protein n=1 Tax=Medicago truncatula RepID=G7I8G4_MEDTR SoyBaseE_val: 2.00E-61ISS

Expression Patterns of Glyma14g24810
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g24810 not represented in the dataset
Glyma14g24810 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g24810
ParalogEvidenceComments
Glyma13g09550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g24810 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g156300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g24810
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g24810
>Glyma14g24810.1   sequence type=CDS   gene model=Glyma14g24810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTCCACTAACACCGAGTGACTTGCTGCGGATTTTCGAGAAGGTGGACATGAATGGCGATGGGTTTTTGAGCCTTGAGGAGTTGAAGATGCTGCTAGAGAAGACAGGGTTCGGTTATAGCATTGAGGAATTGGAGTCTTTGGTGGGAAAGAAAAGCCTCGACTTCAGTGAGTTCTTGTTCTTTTATGAATCTAGGTTGAAGCAGAACAATAATGGGGAGAAGGAATTAGGGGCTAGTGGGGGGGATGATAGTGATGAGGTTGAGGAAGTGGAGAGGGACCTTGTCAAGGCTTTCAAGGTGTTTGATTTGGATGATGATGGGTTCATCACAAGCCAAGAGCTTGAGTGTGTGTTGAAGAGGCTTGGCATGTGGGATGATGAAAGGTGTGGCAAGGATTGTGCATCCATGATTTGCTCCTATGACACTAACTTTGATGGCAAGCTTGATTTTCAGGAGTTTAAGGGCATGATGCTTCTTACAACTTCATGA
Predicted protein sequences of Glyma14g24810
>Glyma14g24810.1   sequence type=predicted peptide   gene model=Glyma14g24810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCPLTPSDLLRIFEKVDMNGDGFLSLEELKMLLEKTGFGYSIEELESLVGKKSLDFSEFLFFYESRLKQNNNGEKELGASGGDDSDEVEEVERDLVKAFKVFDLDDDGFITSQELECVLKRLGMWDDERCGKDCASMICSYDTNFDGKLDFQEFKGMMLLTTS*






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