Glyma14g24370 - SoyBase

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Report for Sequence Feature Glyma14g24370

Feature Type:	gene_model
Chromosome:	Gm14
Start:	29255828
stop:	29261245
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g24370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77380	AT	Annotation by Michelle Graham. TAIR10: amino acid permease 3 \| chr1:29075201-29077252 REVERSE LENGTH=476	SoyBase	E_val: 0	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006820	GO-bp	Annotation by Michelle Graham. GO Biological Process: anion transport	SoyBase	N/A	ISS
GO:0006862	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide transport	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0015696	GO-bp	Annotation by Michelle Graham. GO Biological Process: ammonium transport	SoyBase	N/A	ISS
GO:0015802	GO-bp	Annotation by Michelle Graham. GO Biological Process: basic amino acid transport	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0043090	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid import	SoyBase	N/A	ISS
GO:0043269	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of ion transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1303	KOG	Amino acid transporters	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_B9GU10	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid permease n=1 Tax=Populus trichocarpa RepID=B9GU10_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1MA69	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MA69_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g24370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g24370 not represented in the dataset	Glyma14g24370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g24370

Paralog	Evidence	Comments
Glyma13g10070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g24370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g153500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g24370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g24370

Limit To All Plant Sequences

>Glyma14g24370.3   sequence type=transcript   gene model=Glyma14g24370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTACTTGTGTAACACTAGCTTCTATTCTATTCTATATCTCTCTTTCTCGTTATTATTAGTTTATAGCTTTATTTGCTGAGCGATTTACATTGAATCTCTAATAGAGTAAAGTGGTTGCTGAAACAGAGAAGCATATATAGAGAAAGAGAGAAGGCCCTATATAGCTGAAGCAAGATGATGGAAAACGGTGGCAAACAGACATTTGAAGTCTCAAATGACACGCTTCAACAAGGAGGTTCCAAGAGCTTTGATGATGATGGCCGTCTCAAAAGAACTGGAACTATATGGACTGCAAGTGCCCACATAGTAACAGCTGTTATTGGTTCTGGGGTGCTATCTTTGGCTTGGGCGATTGCTCAGCTAGGTTGGCTTGCTGGTCCTATTGTGATGATTCTGTTCTCTATTGTGACTTATTATACCTCAACTCTTCTAGCTTGTTGTTACCGTTCTGGTGACCAACTCAGTGGCAAGAGAAACTACACTTACACACAAGCTGTTAGATCCAACCTTGGTGGTCTTGCGGTCATGTTTTGTGGGTGGGTTCAGTATGCAAACCTATTTGGAGTGGCAATTGGGTACACCATAGCAGCTTCCATAAGCATGATGGCAGTCAAAAGGTCTAATTGTTATCATAGTAGCGGAGGGAAAAATCCATGCAAAATGAATAGCAATTGGTACATGATTTCATATGGTGTTGCGGAAATTATCTTCTCCCAAATTCCAGATTTCCATGAGTTGTGGTGGCTCTCTATTGTAGCTGCTGTCATGTCCTTCACATACTCATTCATTGGACTTGGCCTTGGTATTGGTAAAGTTATAGGAAACGGAAGAATTAAAGGAAGCCTAACTGGTGTAACTGTTGGGACAGTGACAGAATCCCAGAAAATTTGGAGGAGTTTCCAAGCTCTTGGTAACATAGCCTTTGCCTACTCCTACTCAATGATCCTTATTGAAATTCAGGACACAATCAAATCTCCTCCAGCAGAGTCACAGACAATGTCCAAGGCTACTTTAATCAGTGTTTTGATCACAACCGTTTTCTATATGTTATGTGGCTGCTTTGGCTATGCTTCTTTCGGAGATGCAAGCCCGGGAAACCTTCTCACTGGCTTCGGCTTCTATAACCCATATTGGCTCATTGACATAGCCAATGTTGGCATAGTTATCCACCTTGTTGGTGCATACCAAGTTTACTGCCAACCCCTCTTCTCATTCGTGGAATCACATGCAGCAGCAAGGTTCCCAAATAGTGATTTTATGAGCAGAGAGTTTGAAGTACCAATCCCTGGCTGCAAACCCTACAGGCTCAACCTCTTCAGGTTGGTTTGGAGGACAATTTTTGTGATTTTGTCAACTGTGATAGCCATGCTCCTACCATTCTTCAATGACATTGTAGGGCTTATTGGAGCCATTGGATTTTGGCCCCTCACTGTTTATTTACCAGTGGAGATGTATATAACTCAAACTAAGATACCAAAGTGGGGCCCAAGATGGATATGCCTACAAATGCTTAGTGCTGCATGCTTTGTAGTTACTCTATTAGCTGCAGCAGGTTCCATTGCTGGGGTTATTGATGATCTTAAAGTTTACAAGCCATTCGTCACCAGCTACTAATTGAATAGGATAATTACTTAGTGATCATGATCACCATTGTCAAAGATTTCATTAGCAACAAGAAAGAAAAAAAAAGAGAAAATTCTTGCAGATTGAAATCTATAGGAATGTGGTCTTACTTGTTTATTGCTTAGTAACCTTGTAGACATTTTTACCTATATAAAAAAATTATATGTTTTCAGAGTTACCCGTTACCAACTTTCTTCTACACTCATCTAGTCCCCTAAAATTTTTAGTAACCCTTTTTTTTTTCTATATTGTTGGTTTTGTACTTTGTACCCTTTGGGACCTACACAAGATCAAAGAAACAAGAGCAAGCACAGCAAGGAACAAAGCCAAGAACTACAAAAAGCTTTTACGTGGTTCAACAATGTGCCTACATCCATGGGAAAATGCAGTTCATCATCATCACATTCATCATGGAGATTACAAGTTCAATACAAGCAGAAGTTAGCTTTGATCTCTTTCGGTTTCTTTAGACAAAACCTCTCTCAATCTCCTAGCTCTCTATCACCTTTCAAACTTTCTTTCTCTCTGAAAAAAAAAACCCCTCTCTCATTTACATGATAAAGAATTTATATACACAAGTTGCTAGCTCTAGGAGGAAAAGATTTTTCTTTGGTGCCAAGTCACTAATTCAGTTAAGACAACTAAATTCAGTTATGACATCAATTATACAATCCTTCACATTTGTGGCTTTGGTGATTTTTGAGTCACACACACCACAAATCTCCACCTTGACTCCAAAAACAACAAGTGTCTATCTTGTGATTCCGGGCTGCACTTCTACTAATATTCTTTAGGCATCTTCAAAATCGATCAAGTCCAGGCAGTGCTTGAACTTGACACTAGATAGGGACTTTGTGAACATGTCACCAGGGTTTTCTTCTGTTGAAACCTTCTCCACCTTCACCTTCTCAGAATCAATCACATCTCTGATGAAGTGTAGTTTCACATCAATATGCTTCATCCTCTCATGGTAAATTTGGTGATTTGCTAAATGAAT

Coding sequences of Glyma14g24370

Limit To All Plant Sequences

>Glyma14g24370.2   sequence type=CDS   gene model=Glyma14g24370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAAAACGGTGGCAAACAGACATTTGAAGTCTCAAATGACACGCTTCAACAAGGAGGTTCCAAGAGCTTTGATGATGATGGCCGTCTCAAAAGAACTGGAACTATATGGACTGCAAGTGCCCACATAGTAACAGCTGTTATTGGTTCTGGGGTGCTATCTTTGGCTTGGGCGATTGCTCAGCTAGGTTGGCTTGCTGGTCCTATTGTGATGATTCTGTTCTCTATTGTGACTTATTATACCTCAACTCTTCTAGCTTGTTGTTACCGTTCTGGTGACCAACTCAGTGGCAAGAGAAACTACACTTACACACAAGCTGTTAGATCCAACCTTGGTGGTCTTGCGGTCATGTTTTGTGGGTGGGTTCAGTATGCAAACCTATTTGGAGTGGCAATTGGGTACACCATAGCAGCTTCCATAAGCATGATGGCAGTCAAAAGGTCTAATTGTTATCATAGTAGCGGAGGGAAAAATCCATGCAAAATGAATAGCAATTGGTACATGATTTCATATGGTGTTGCGGAAATTATCTTCTCCCAAATTCCAGATTTCCATGAGTTGTGGTGGCTCTCTATTGTAGCTGCTGTCATGTCCTTCACATACTCATTCATTGGACTTGGCCTTGGTATTGGTAAAGTTATAGGAAACGGAAGAATTAAAGGAAGCCTAACTGGTGTAACTGTTGGGACAGTGACAGAATCCCAGAAAATTTGGAGGAGTTTCCAAGCTCTTGGTAACATAGCCTTTGCCTACTCCTACTCAATGATCCTTATTGAAATTCAGGACACAATCAAATCTCCTCCAGCAGAGTCACAGACAATGTCCAAGGCTACTTTAATCAGTGTTTTGATCACAACCGTTTTCTATATGTTATGTGGCTGCTTTGGCTATGCTTCTTTCGGAGATGCAAGCCCGGGAAACCTTCTCACTGGCTTCGGCTTCTATAACCCATATTGGCTCATTGACATAGCCAATGTTGGCATAGTTATCCACCTTGTTGGTGCATACCAAGTTTACTGCCAACCCCTCTTCTCATTCGTGGAATCACATGCAGCAGCAAGGTTCCCAAATAGTGATTTTATGAGCAGAGAGTTTGAAGTACCAATCCCTGGCTGCAAACCCTACAGGCTCAACCTCTTCAGGTTGGTTTGGAGGACAATTTTTGTGATTTTGTCAACTGTGATAGCCATGCTCCTACCATTCTTCAATGACATTGTAGGGCTTATTGGAGCCATTGGATTTTGGCCCCTCACTGTTTATTTACCAGTGGAGATGTATATAACTCAAACTAAGATACCAAAGTGGGGCCCAAGATGGATATGCCTACAAATGCTTAGTGCTGCATGCTTTGTAGTTACTCTATTAGCTGCAGCAGGTTCCATTGCTGGGGTTATTGATGATCTTAAAGTTTACAAGCCATTCGTCACCAGCTACTAA

>Glyma14g24370.3   sequence type=CDS   gene model=Glyma14g24370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAAAACGGTGGCAAACAGACATTTGAAGTCTCAAATGACACGCTTCAACAAGGAGGTTCCAAGAGCTTTGATGATGATGGCCGTCTCAAAAGAACTGGAACTATATGGACTGCAAGTGCCCACATAGTAACAGCTGTTATTGGTTCTGGGGTGCTATCTTTGGCTTGGGCGATTGCTCAGCTAGGTTGGCTTGCTGGTCCTATTGTGATGATTCTGTTCTCTATTGTGACTTATTATACCTCAACTCTTCTAGCTTGTTGTTACCGTTCTGGTGACCAACTCAGTGGCAAGAGAAACTACACTTACACACAAGCTGTTAGATCCAACCTTGGTGGTCTTGCGGTCATGTTTTGTGGGTGGGTTCAGTATGCAAACCTATTTGGAGTGGCAATTGGGTACACCATAGCAGCTTCCATAAGCATGATGGCAGTCAAAAGGTCTAATTGTTATCATAGTAGCGGAGGGAAAAATCCATGCAAAATGAATAGCAATTGGTACATGATTTCATATGGTGTTGCGGAAATTATCTTCTCCCAAATTCCAGATTTCCATGAGTTGTGGTGGCTCTCTATTGTAGCTGCTGTCATGTCCTTCACATACTCATTCATTGGACTTGGCCTTGGTATTGGTAAAGTTATAGGAAACGGAAGAATTAAAGGAAGCCTAACTGGTGTAACTGTTGGGACAGTGACAGAATCCCAGAAAATTTGGAGGAGTTTCCAAGCTCTTGGTAACATAGCCTTTGCCTACTCCTACTCAATGATCCTTATTGAAATTCAGGACACAATCAAATCTCCTCCAGCAGAGTCACAGACAATGTCCAAGGCTACTTTAATCAGTGTTTTGATCACAACCGTTTTCTATATGTTATGTGGCTGCTTTGGCTATGCTTCTTTCGGAGATGCAAGCCCGGGAAACCTTCTCACTGGCTTCGGCTTCTATAACCCATATTGGCTCATTGACATAGCCAATGTTGGCATAGTTATCCACCTTGTTGGTGCATACCAAGTTTACTGCCAACCCCTCTTCTCATTCGTGGAATCACATGCAGCAGCAAGGTTCCCAAATAGTGATTTTATGAGCAGAGAGTTTGAAGTACCAATCCCTGGCTGCAAACCCTACAGGCTCAACCTCTTCAGGTTGGTTTGGAGGACAATTTTTGTGATTTTGTCAACTGTGATAGCCATGCTCCTACCATTCTTCAATGACATTGTAGGGCTTATTGGAGCCATTGGATTTTGGCCCCTCACTGTTTATTTACCAGTGGAGATGTATATAACTCAAACTAAGATACCAAAGTGGGGCCCAAGATGGATATGCCTACAAATGCTTAGTGCTGCATGCTTTGTAGTTACTCTATTAGCTGCAGCAGGTTCCATTGCTGGGGTTATTGATGATCTTAAAGTTTACAAGCCATTCGTCACCAGCTACTAA

Predicted protein sequences of Glyma14g24370

Limit To All Plant Sequences

>Glyma14g24370.2   sequence type=predicted peptide   gene model=Glyma14g24370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMENGGKQTFEVSNDTLQQGGSKSFDDDGRLKRTGTIWTASAHIVTAVIGSGVLSLAWAIAQLGWLAGPIVMILFSIVTYYTSTLLACCYRSGDQLSGKRNYTYTQAVRSNLGGLAVMFCGWVQYANLFGVAIGYTIAASISMMAVKRSNCYHSSGGKNPCKMNSNWYMISYGVAEIIFSQIPDFHELWWLSIVAAVMSFTYSFIGLGLGIGKVIGNGRIKGSLTGVTVGTVTESQKIWRSFQALGNIAFAYSYSMILIEIQDTIKSPPAESQTMSKATLISVLITTVFYMLCGCFGYASFGDASPGNLLTGFGFYNPYWLIDIANVGIVIHLVGAYQVYCQPLFSFVESHAAARFPNSDFMSREFEVPIPGCKPYRLNLFRLVWRTIFVILSTVIAMLLPFFNDIVGLIGAIGFWPLTVYLPVEMYITQTKIPKWGPRWICLQMLSAACFVVTLLAAAGSIAGVIDDLKVYKPFVTSY*

>Glyma14g24370.3   sequence type=predicted peptide   gene model=Glyma14g24370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMENGGKQTFEVSNDTLQQGGSKSFDDDGRLKRTGTIWTASAHIVTAVIGSGVLSLAWAIAQLGWLAGPIVMILFSIVTYYTSTLLACCYRSGDQLSGKRNYTYTQAVRSNLGGLAVMFCGWVQYANLFGVAIGYTIAASISMMAVKRSNCYHSSGGKNPCKMNSNWYMISYGVAEIIFSQIPDFHELWWLSIVAAVMSFTYSFIGLGLGIGKVIGNGRIKGSLTGVTVGTVTESQKIWRSFQALGNIAFAYSYSMILIEIQDTIKSPPAESQTMSKATLISVLITTVFYMLCGCFGYASFGDASPGNLLTGFGFYNPYWLIDIANVGIVIHLVGAYQVYCQPLFSFVESHAAARFPNSDFMSREFEVPIPGCKPYRLNLFRLVWRTIFVILSTVIAMLLPFFNDIVGLIGAIGFWPLTVYLPVEMYITQTKIPKWGPRWICLQMLSAACFVVTLLAAAGSIAGVIDDLKVYKPFVTSY*

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