SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma14g24270

Feature Type:gene_model
Chromosome:Gm14
Start:29060389
stop:29066872
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g24270
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G21720AT Annotation by Michelle Graham. TAIR10: proteasome beta subunit C1 | chr1:7626394-7628070 FORWARD LENGTH=204 SoyBaseE_val: 7.00E-144ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051603GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis involved in cellular protein catabolic process SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0000502GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005839GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex SoyBaseN/AISS
GO:0004175GO-mf Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity SoyBaseN/AISS
GO:0004298GO-mf Annotation by Michelle Graham. GO Molecular Function: threonine-type endopeptidase activity SoyBaseN/AISS
GO:0008233GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidase activity SoyBaseN/AISS
KOG0180 KOG 20S proteasome, regulatory subunit beta type PSMB3/PUP3 JGI ISS
PTHR11599Panther PROTEASOME SUBUNIT ALPHA/BETA JGI ISS
PTHR11599:SF7Panther PROTEASOME BETA SUBUNIT JGI ISS
PF00227PFAM Proteasome subunit JGI ISS
UniRef100_I1MA63UniRef Annotation by Michelle Graham. Most informative UniRef hit: Proteasome subunit beta type n=2 Tax=Glycine max RepID=I1MA63_SOYBN SoyBaseE_val: 1.00E-149ISS
UniRef100_I1MA63UniRef Annotation by Michelle Graham. Best UniRef hit: Proteasome subunit beta type n=2 Tax=Glycine max RepID=I1MA63_SOYBN SoyBaseE_val: 1.00E-149ISS

Expression Patterns of Glyma14g24270
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g24270
ParalogEvidenceComments
Glyma13g10130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g24270 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g152900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g24270
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma14g24270
>Glyma14g24270.2   sequence type=transcript   gene model=Glyma14g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATATAAAATGTTATTATTATTTGGTGGCTTAACCCCAAAGAAAACTAGGGTGCTCTTCTTGAAATACTAACTAAGACGACAAGGACAACATTATTTGACGACTTAACCCCAAACAAAGGCTCTGCAATTGCAAATTCAGAGGATGTCGATCTTCGAGTACAACGGAAGCGCCGTGGTGGCTATGGTCGGCAAGAACTGCTTCGCCATTGCCAGCGACCGAAGGCTCGGCGTTCAGCTCCAAACTATAGCCACGGATTTTCAACGCATTTCCAAGATTCACGACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAATTATAAGCCACCTGGGATTTCTGTTTAGCTTGGAGCTGAATGTCATGACATTTACCCTCCTTTGTTTTAAAGGGTACCTTGTTATTGTGGCTCTTTAGATAAAATGTACCCTGAAATTTATATATTGACGGTTTCACTTGTTCTATATTTAGATTATCAGTGAAAAGGAGATACTTGAGTTGGGCATGTTGTGAATTTGAGTGGCCTATTGGAATGTTTTTCAGTGCAGACTGGCATGCAAAGCACGAGAATGATACAAGAATTGCCTCAAATCTATTTCTCCCGTTTTTTTCTTCCTTTCTTCTGGTGTTCTTGTATAAATGATTATTTGCTTTCAAAAAGGGTATTAAAAGTCTTTTTTTAAAAAAATA

>Glyma14g24270.3   sequence type=transcript   gene model=Glyma14g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACTAAGACGACAAGGACAACATTATTTGACGACTTAACCCCAAACAAAGGCTCTGCAATTGCAAATTCAGAGGATGTCGATCTTCGAGTACAACGGAAGCGCCGTGGTGGCTATGGTCGGCAAGAACTGCTTCGCCATTGCCAGCGACCGAAGGCTCGGCGTTCAGCTCCAAACTATAGCCACGGATTTTCAACGCATTTCCAAGATTCACGACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAATTATAAGCCACCTGGGATTTCTGTTTAGCTTGGAGCTGAATGTCATGACATTTACCCTCCTTTGTTTTAAAGGGTACCTTGTTATTGTGGCTCTTTAGATAAAATGTACCCTGAAATTTATATATTGACGGTTTCACTTGTTCTATATTTAGATTATCAGTGAAAAGGAGATACTTGAGTTGGGCATGTTGTGAATTTGAGTGGCCTATTGGAATGTTTTTCAGTGCAGACTGGCATGCAAAGCACGAGAATGATACAAGAATTGCCTCAAATCTATTTCTCCCGTTTTTTTCTTCCTTTCTTCTGGTGTTCTTGTATAAATGATTATTTGCTTTCAAAAA
Coding sequences of Glyma14g24270
>Glyma14g24270.1   sequence type=CDS   gene model=Glyma14g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGATCTTCGAGTACAACGGAAGCGCCGTGGTGGCTATGGTCGGCAAGAACTGCTTCGCCATTGCCAGCGACCGAAGGCTCGGCGTTCAGCTCCAAACTATAGCCACGGATTTTCAACGCATTTCCAAGATTCACGACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGA

>Glyma14g24270.2   sequence type=CDS   gene model=Glyma14g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGATCTTCGAGTACAACGGAAGCGCCGTGGTGGCTATGGTCGGCAAGAACTGCTTCGCCATTGCCAGCGACCGAAGGCTCGGCGTTCAGCTCCAAACTATAGCCACGGATTTTCAACGCATTTCCAAGATTCACGACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGA

>Glyma14g24270.3   sequence type=CDS   gene model=Glyma14g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGATCTTCGAGTACAACGGAAGCGCCGTGGTGGCTATGGTCGGCAAGAACTGCTTCGCCATTGCCAGCGACCGAAGGCTCGGCGTTCAGCTCCAAACTATAGCCACGGATTTTCAACGCATTTCCAAGATTCACGACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTCACGCCAAATGA
Predicted protein sequences of Glyma14g24270
>Glyma14g24270.1   sequence type=predicted peptide   gene model=Glyma14g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIALSGLATDAQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLGDEDKPFICTMDCIGAKELAKDFVVSGTASESLYGACEAMFKPDMEPEELFETISQALLSSVDRDCLSGWGGHVYVVTPNEVKERILKGRMD*

>Glyma14g24270.2   sequence type=predicted peptide   gene model=Glyma14g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIALSGLATDAQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLGDEDKPFICTMDCIGAKELAKDFVVSGTASESLYGACEAMFKPDMEPEELFETISQALLSSVDRDCLSGWGGHVYVVTPNEVKERILKGRMD*

>Glyma14g24270.3   sequence type=predicted peptide   gene model=Glyma14g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIALSGLATDAQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLGDEDKPFICTMDCIGAKELAKDFVVSGTASESLYGACEAMFKPDMEPEELFETISQALLSSVDRDCLSGWGGHVYVHAK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo