Glyma14g24260 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma14g24260

Feature Type:	gene_model
Chromosome:	Gm14
Start:	29056135
stop:	29057614
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g24260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G47180	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr3:17372821-17373453 REVERSE LENGTH=210	SoyBase	E_val: 4.00E-37	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR14155	Panther	RING FINGER PROTEIN 6/12/38	JGI		ISS
PTHR14155:SF33	Panther	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7J4X5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7J4X5_MEDTR	SoyBase	E_val: 2.00E-67	ISS
UniRef100_I1MA62	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MA62_SOYBN	SoyBase	E_val: 3.00E-147	ISS

Expression Patterns of Glyma14g24260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g24260

Paralog	Evidence	Comments
Glyma13g10140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g24260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g152800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g24260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g24260

Limit To All Plant Sequences

>Glyma14g24260.2   sequence type=transcript   gene model=Glyma14g24260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTCATCTTCAAAGAAATTTCCAAACTTGTGCTTTCATCCATCGATGTCCTCAAATACCTCTATCACTTCTTTCCCAACCCATCAATTCTTTTGGCTAATTAGTAATTACCCTTAATTTTTTGGTCCTTCAATGGAACGTGAAGAAGGCAAACAACCTCCCCAAAAAACCCCATTACACAATCAACATGAGCAAGCTAATTCTGACAACAATTTTGTTCAAGAAAATAACTTGCAAGAGCAAAGTGGGACATTCACAACTTTTGCATCATTTGAAAGTGAAACTGAGGGTGAGTCCTCTTTTGATGACAATGATTATGATGCTGATTTTTTCCTGAGCCAAGAGTTCGAATCAGAACTTCAATTTCTTGAGAGTGAAGGAAGCAATGACAACGGCGATGATTATGATAATGAAGATGACGAAGATATGGAAGAAGATGAGATCGATGTAGATGAATTGACTTATGAGGAATTGATTGAGTTGGGAGATTTTATAGGACAAGAGAAGAGAGGGTTGTCAGCACATGAGATCTGTTCATGCTTGCATTCTCACACTTTCCATTCTGCTGAAAACAAAAGTGGAATTGATCGTTGTGTGATTTGTCAGGTCGAATATGAAGAAGGTGAATCTTTGGTGGCAATTCAGTGTGAGCACCCTTATCACACAGATTGCATAAGCAAGTGGCTCCAAATTAAGAAGGTTTGCCCAATATGTAACATCGAAATTTCAGCTCCCAAGATGTAAAATGTTGGTGGCACGTGAAGGTGTCAAGGTGAGAAGGTTCGTTGCTGTTTCTTTGGAGGCTGTCATGCCGTAACTTGCTAAATTAAAGACTATGTCTACGTATGTATCACACCTAGTTATTTATTTACTTAAAAGAAGGCTTTAGCCTAGCCGACACAGA

Coding sequences of Glyma14g24260

Limit To All Plant Sequences

>Glyma14g24260.1   sequence type=CDS   gene model=Glyma14g24260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACGTGAAGAAGGCAAACAACCTCCCCAAAAAACCCCATTACACAATCAACATGAGCAAGCTAATTCTGACAACAATTTTGTTCAAGAAAATAACTTGCAAGAGCAAAGTGGGACATTCACAACTTTTGCATCATTTGAAAGTGAAACTGAGGGTGAGTCCTCTTTTGATGACAATGATTATGATGCTGATTTTTTCCTGAGCCAAGAGTTCGAATCAGAACTTCAATTTCTTGAGAGTGAAGGAAGCAATGACAACGGCGATGATTATGATAATGAAGATGACGAAGATATGGAAGAAGATGAGATCGATGTAGATGAATTGACTTATGAGGAATTGATTGAGTTGGGAGATTTTATAGGACAAGAGAAGAGAGGGTTGTCAGCACATGAGATCTGTTCATGCTTGCATTCTCACACTTTCCATTCTGCTGAAAACAAAAGTGGAATTGATCGTTGTGTGATTTGTCAGGTCGAATATGAAGAAGGTGAATCTTTGGTGGCAATTCAGTGTGAGCACCCTTATCACACAGATTGCATAAGCAAGTGGCTCCAAATTAAGAAGGTTTGCCCAATATGTAACATCGAAATTTCAGCTCCCAAGATGGTTAGTTAA

>Glyma14g24260.2   sequence type=CDS   gene model=Glyma14g24260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACGTGAAGAAGGCAAACAACCTCCCCAAAAAACCCCATTACACAATCAACATGAGCAAGCTAATTCTGACAACAATTTTGTTCAAGAAAATAACTTGCAAGAGCAAAGTGGGACATTCACAACTTTTGCATCATTTGAAAGTGAAACTGAGGGTGAGTCCTCTTTTGATGACAATGATTATGATGCTGATTTTTTCCTGAGCCAAGAGTTCGAATCAGAACTTCAATTTCTTGAGAGTGAAGGAAGCAATGACAACGGCGATGATTATGATAATGAAGATGACGAAGATATGGAAGAAGATGAGATCGATGTAGATGAATTGACTTATGAGGAATTGATTGAGTTGGGAGATTTTATAGGACAAGAGAAGAGAGGGTTGTCAGCACATGAGATCTGTTCATGCTTGCATTCTCACACTTTCCATTCTGCTGAAAACAAAAGTGGAATTGATCGTTGTGTGATTTGTCAGGTCGAATATGAAGAAGGTGAATCTTTGGTGGCAATTCAGTGTGAGCACCCTTATCACACAGATTGCATAAGCAAGTGGCTCCAAATTAAGAAGGTTTGCCCAATATGTAACATCGAAATTTCAGCTCCCAAGATGTAA

Predicted protein sequences of Glyma14g24260

Limit To All Plant Sequences

>Glyma14g24260.1   sequence type=predicted peptide   gene model=Glyma14g24260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEREEGKQPPQKTPLHNQHEQANSDNNFVQENNLQEQSGTFTTFASFESETEGESSFDDNDYDADFFLSQEFESELQFLESEGSNDNGDDYDNEDDEDMEEDEIDVDELTYEELIELGDFIGQEKRGLSAHEICSCLHSHTFHSAENKSGIDRCVICQVEYEEGESLVAIQCEHPYHTDCISKWLQIKKVCPICNIEISAPKMVS*

>Glyma14g24260.2   sequence type=predicted peptide   gene model=Glyma14g24260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEREEGKQPPQKTPLHNQHEQANSDNNFVQENNLQEQSGTFTTFASFESETEGESSFDDNDYDADFFLSQEFESELQFLESEGSNDNGDDYDNEDDEDMEEDEIDVDELTYEELIELGDFIGQEKRGLSAHEICSCLHSHTFHSAENKSGIDRCVICQVEYEEGESLVAIQCEHPYHTDCISKWLQIKKVCPICNIEISAPKM*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain